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neurorestore / DE-analysis

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Wrong bulk CanoGamez2020 files #7

Open AnthoOzier opened 1 year ago

AnthoOzier commented 1 year ago

Hello again,

I am trying to reproduce your analyses on the 18 'ground truth' datasets provided with your paper on Zenodo (https://doi.org/10.5281/zenodo.5048449) and I noticed that the bulk files associated to the CanoGamez2020 publication all contain the same assay slot but different meta slots.

Each file contains a copy of the assay of the "CanoGamez2020_memory-iTreg" dataset, which is the only file where sample_ids in the meta slot match with the sample_ids of the assay table.

In other words, the metadata are correct but not the data for the bulk CanoGamez2020 files (except CanoGamez2020_memory-iTreg dataset). Would it be possible for you to provide the correct datasets for the CanoGamez files ?

Thank you in advance.

skinnider commented 1 year ago

Thanks for catching this. Tagging @jordansquair to update the Cano-Gamez datasets on Zenodo.

jordansquair commented 1 year ago

CanoGamez datasets are updated on Zenodo.