neuroscout neuroscout-cli issues

neuroscout / neuroscout-cli

NeuroScout command line interface

https://neuroscout-cli.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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issues

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Simplify installation code by loading from pyNS

#161 adelavega opened 1 year ago
0
Add docs

#160 adelavega closed 2 years ago
0
Add RTD documentation

#159 adelavega closed 2 years ago
0
Add Google Colab Demo Notebook

#158 adelavega closed 2 years ago
1
No-get skip DataLad but not Get set up

#157 adelavega closed 2 years ago
0
ValueError: group_by contains variable(s) ['group'] that could not be found in the entity index.

#156 adelavega opened 2 years ago
2
run in google collab / binder

#155 adelavega closed 2 years ago
1
Fix DataLad progress bars

#154 adelavega opened 2 years ago
0
TMP: Test DataLad progress

#153 adelavega opened 2 years ago
0
FIX: Save dataset_dir to allow DataLad to get files

#152 adelavega closed 2 years ago
0
Fix incorrect CLI flags

#151 adelavega closed 2 years ago
0
[RF] Pass arbitrary arguments to FitLins, use click instead of Docopt

#150 adelavega closed 2 years ago
1
Cache pybids database for dataset to speed up loading large datasets (i.e. narratives)

#149 adelavega opened 2 years ago
0
Simplify neuroscout-cli fitlins wrapper

#148 adelavega closed 2 years ago
1
Convert BIDS Stats models to v1

#147 adelavega closed 2 years ago
5
Speed up indexing and fetching of relevant files w/ custom logic

#146 adelavega closed 2 years ago
0
retcode reference before assignment in upload only mode

#145 adelavega closed 2 years ago
0
Upload full provenance of CLI command used

#144 adelavega closed 2 years ago
0
FIX: Smoothing in fitlins occurs at incorrect level

#143 adelavega closed 2 years ago
0
Allow users to pick when to smooth

#142 adelavega closed 2 years ago
1
FIX: Pass n-cpus

#141 adelavega closed 2 years ago
0
Catch failures from fitlins

#140 adelavega closed 2 years ago
0
Save options to disk

#139 adelavega closed 3 years ago
0
on upload only: still upload meta-data such as estimator.

#138 adelavega closed 3 years ago
0
Change back to GITHUB_TOKEN

#137 adelavega closed 3 years ago
0
Use tag for address

#136 adelavega closed 3 years ago
0
Add singularity builds

#135 adelavega closed 3 years ago
0
Add github actions

#134 adelavega closed 3 years ago
1
Fix upload grabbing

#133 adelavega closed 3 years ago
0
setup github actions for docker hub pushing

#132 adelavega closed 3 years ago
0
use datalad run to run fitlins

#131 adelavega closed 2 years ago
0
FIX: Don't drop if -i defined

#130 adelavega closed 3 years ago
0
REL: 0.5.1

#129 adelavega closed 3 years ago
0
bump pynv

#128 adelavega closed 3 years ago
0
REF: Refactor directory structure

#127 adelavega closed 3 years ago
9
New release with pyBIDS fix, after confirming it works

#126 adelavega closed 3 years ago
0
infer preproc folder name

#125 adelavega closed 3 years ago
1
Re-configure directory defaults

#124 adelavega closed 3 years ago
10
Release neuroscout-cli 0.5.

#123 adelavega closed 3 years ago
0
REL: new neuroscout-cli version

#122 adelavega closed 3 years ago
0
neuroscout-cli bump fitlins version and test

#121 adelavega closed 3 years ago
0
fitlins REL 0.9

#120 adelavega closed 3 years ago
0
Fitlins: disable automatic drift modeling

#119 adelavega closed 3 years ago
0
Fitins: writout estimator

#118 adelavega closed 3 years ago
0
Look for all stat maps when uploading

#117 adelavega closed 3 years ago
0
Add estimator to CLI

#116 adelavega closed 3 years ago
1
Support alternative subfolders for preproc

#115 adelavega closed 3 years ago
0
Log fmriprep and cli versions with upload

#114 adelavega closed 3 years ago
1
where would it make sense to test running an analysis?

#113 jdkent opened 3 years ago
3
REL: 0.4.1

#112 adelavega closed 3 years ago
0