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neurosutton / connectivity

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Check functionality of the AUC calculation / iterative statistics. #9

Closed joshbear closed 3 years ago

joshbear commented 3 years ago

With the changes to the save_long_format code output, need to test the AUC calculations and statistical analysis. 1 - Does it work with the current format? 2 - Can it accept specified subgraph / network rather than whole brain?

neurosutton commented 3 years ago

Ran ipynb to check the updates. (see Teams) 1 - Yes, the flexible solve for the measures in the df.columns identifies the scores that need to be permuted. Columns where scores do not exist for a network are not permuted. 2 - Yes, networks can be specified as input and the algorithm locates the network-affiliated rows right off the bat.

Note: graph_analysis_functions was changed in this commit to include a threshold for the subgraph results. Without the threshold the AUC cannot run.