neurosynth / ACE

Tools for automatic extraction of activation coordinates from published neuroimaging articles.
MIT License
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column mismatch #41

Open jdkent opened 3 months ago

jdkent commented 3 months ago

INFO:ace.scrape:Retrieving metadata from file /data/alejandro/projects/neurosynth_scrape/pm_metadata/32919057... INFO sources Found 3 tables. INFO:ace.sources:Found 3 tables. INFO tableparser Possible multi-column coordinates found: 1/2, MNI-coordinates INFO:ace.tableparser:Possible multi-column coordinates found: 1/2, MNI-coordinates WARNING tableparser Skipping row with 6 cells (expected 7): ['Region', '@@MNI-coordinates@2', '@@MNI-coordinates', 'Empty Cell', 't-value', 'n-voxels'] WARNING:ace.tableparser:Skipping row with 6 cells (expected 7): ['Region', '@@MNI-coordinates@2', '@@MNI-coordinates', 'Empty Cell', 't-value', 'n-voxels'] WARNING tableparser Skipping row with 6 cells (expected 7): ['L inferior frontal gyrus', '-34', '30', '18', '5.24', '66'] WARNING:ace.tableparser:Skipping row with 6 cells (expected 7): ['L inferior frontal gyrus', '-34', '30', '18', '5.24', '66'] WARNING tableparser Skipping row with 6 cells (expected 7): ['R inferior parietal lobule', '48', '-34', '52', '4.95', '37'] WARNING:ace.tableparser:Skipping row with 6 cells (expected 7): ['R inferior parietal lobule', '48', '-34', '52', '4.95', '37'] WARNING tableparser Skipping row with 6 cells (expected 7): ['L cerebellum lobule VI', '-24', '-58', '-34', '4.81', '43'] WARNING:ace.tableparser:Skipping row with 6 cells (expected 7): ['L cerebellum lobule VI', '-24', '-58', '-34', '4.81', '43'] WARNING tableparser Skipping row with 6 cells (expected 7): ['L cerebellar crus I', '-38', '-58', '-34', '4.46', '71'] WARNING:ace.tableparser:Skipping row with 6 cells (expected 7): ['L cerebellar crus I', '-38', '-58', '-34', '4.46', '71'] WARNING tableparser Skipping row with 6 cells (expected 7): ['R primary motor cortex', '48', '-30', '60', '4.25', '67'] WARNING:ace.tableparser:Skipping row with 6 cells (expected 7): ['R primary motor cortex', '48', '-30', '60', '4.25', '67']