Write a tutorial for running GetDOS in jupyter notebook at SNS analysis cluster

yxqd commented 8 years ago

empty-browser2

start-server

browser-root2

cpgetdosnb

browserroot-showgetdosgui

yxqd commented 8 years ago

See https://github.com/sns-chops/multiphonon/wiki/Use-jupyter-notebook-to-run-GetDOS-calculation-at-SNS-analysis-cluster

yxqd commented 7 years ago

filebrowser-click-notebooks

filebrowser-click-arcs

filebrowser-click-getdos

getdos

yxqd commented 7 years ago

Old tutorial. Don't need the setup anymore. Setup is now automatic.

This page explains how to set up your jupyter notebook environment at SNS. This only has to be done for once.

Connect to SNS analysis cluster using thinlinc

SNS jupyter service is now only available from inside the SNS analysis cluseter. So the first step is to connect to SNS analysis cluster using thinlinc.

Open http://analysis.sns.gov in a browser and log in
Log in again if the screen saver was on

Set up jupyter notebook environment

All the following steps happen inside the thinlinc window of the SNS analysis cluster.

Open a browser
Browse to https://jupyter.sns.gov and log in
You are now presented the jupyter view of your home directory at analysis cluster as shown below. Click "New" and then select the "SNS jupyter environment" kernel to create a new notebook.
You are now presented with a new, empty notebook
Type in the code
```
import sje;
sje.setup()
```
to setup your jupyter notebook environment.
Close this notebook
It is done! Your SNS jupyter environment was set up. You are ready to move on to the next step. Use the jupyter notebooks for your data analysis.

yxqd commented 7 years ago

Even older tutorial

This tutorial is obsolete

Connect to SNS analysis cluster using thinlinc client or browser. All the following actions happen inside the SNS analysis cluster window.

First open a browser window:

empty-browser2

Then start a terminal and type in the following commands to start the jupyter server:
```
$ /SNS/ARCS/shared/sns-chops/start-jupyter
```
Now a new browser tab will show up with a welcoming page
Jupyter notebook is now ready to use. You should not need to do this again unless the jupyter notebook server was killed.

This tutorial is obsolete, please go to the new tutorial

Connect to SNS analysis cluster using thinlinc client or browser. All the following actions happen inside the SNS analysis cluster window.

First start the jupyter notebook if you have not done so

Open a GetDOS UI notebook by running the following command in a terminal

/SNS/ARCS/shared/sns-chops/open-jupyter-notebook /SNS/ARCS/shared/sns-chops/multiphonon/examples/GetDOS_GUI.ipynb

A new browser window should show up.

In the browser window for your new notebook, click menu "Kernel" -> "Change kernel" -> "spida"
Follow the instructions in the notebook.

yxqd commented 7 years ago

Done. see wiki page

neutrons / multiphonon