Closed mjy closed 6 years ago
Nexml is a phylogenetic format that can be used outside bio. I don't think there are any real dependencies on bio. Feel free to remove.
Sorry, there is. bio-nexml's trees are derived from bio's.
Any problem with dependencies is with the xml parser (libxml-ruby).
So, if you want to move out, create another tree object. Should not be too hard. Bio is pure Ruby, so hardly a real issue.
I think this issue can be closed. It is not really a bug.
I agree, but since when are issues always bugs?
@pjotrp besides the namespacing, does this library require code outside of /lib? My superficial assessment is that it doesn't.
It's been a while since I've dived into /bio, so this is an ignorant question, but could you briefly highlight reasons for not extracting this library to a stand-alone gem without the overhead of the rest of bio?