[Bug]: integrity check : missing .git directory

⚠️ This issue respects the following points: ⚠️

[X] This is a bug, not a question or a configuration/webserver/proxy issue.
[X] This issue is not already reported on Github (I've searched it).
[X] Nextcloud Server is up to date. See Maintenance and Release Schedule for supported versions.
[X] Nextcloud Server is running on 64bit capable CPU, PHP and OS.
[X] I agree to follow Nextcloud's Code of Conduct.

Bug description

code integrity check says files are missing, whole .git directory. I don't have a .git directory under my webroot.

Steps to reproduce

go to /settings/integrity/failed

Expected behavior

having the .git directory or
ignoring this directory check

Installation method

Community Manual installation with Archive

Operating system

Debian/Ubuntu

PHP engine version

PHP 8.0

Web server

Apache (supported)

Database engine version

MySQL

Is this bug present after an update or on a fresh install?

Updated to a major version (ex. 22.2.3 to 23.0.1)

Are you using the Nextcloud Server Encryption module?

No response

What user-backends are you using?

[X] Default user-backend (database)
[ ] LDAP/ Active Directory
[ ] SSO - SAML
[ ] Other

Configuration report

{
    "system": {
        "instanceid": "***REMOVED SENSITIVE VALUE***",
        "passwordsalt": "***REMOVED SENSITIVE VALUE***",
        "secret": "***REMOVED SENSITIVE VALUE***",
        "trusted_domains": [
            "cloud.dsconnectic.com"
        ],
        "datadirectory": "***REMOVED SENSITIVE VALUE***",
        "dbtype": "mysql",
        "version": "24.0.5.1",
        "overwrite.cli.url": "http:\/\/cloud.dsconnectic.com",
        "dbname": "***REMOVED SENSITIVE VALUE***",
        "dbhost": "***REMOVED SENSITIVE VALUE***",
        "dbport": "",
        "dbtableprefix": "oc_",
        "mysql.utf8mb4": true,
        "dbuser": "***REMOVED SENSITIVE VALUE***",
        "dbpassword": "***REMOVED SENSITIVE VALUE***",
        "installed": true,
        "updater.release.channel": "stable",
        "maintenance": false,
        "theme": "",
        "loglevel": 0,
        "app_install_overwrite": [
            "files_external_gdrive",
            "admin_notifications",
            "dashboard"
        ],
        "default_language": "fr",
        "default_locale": "fr_FR",
        "encryption.legacy_format_support": false,
        "encryption.key_storage_migrated": false,
        "has_rebuilt_cache": true,
        "default_phone_region": "FR",
        "trashbin_retention_obligation": "30, 35",
        "updater.secret": "***REMOVED SENSITIVE VALUE***",
        "mail_smtpmode": "smtp",
        "mail_smtphost": "***REMOVED SENSITIVE VALUE***",
        "mail_sendmailmode": "smtp",
        "mail_smtpport": "465",
        "mail_smtpsecure": "ssl",
        "mail_smtpauthtype": "LOGIN",
        "mail_smtpauth": 1,
        "mail_from_address": "***REMOVED SENSITIVE VALUE***",
        "mail_domain": "***REMOVED SENSITIVE VALUE***",
        "mail_smtpname": "***REMOVED SENSITIVE VALUE***",
        "mail_smtppassword": "***REMOVED SENSITIVE VALUE***"
    }
}

List of activated Apps

Enabled:
  - accessibility: 1.10.0
  - activity: 2.16.0
  - admin_audit: 1.14.0
  - announcementcenter: 6.3.1
  - bookmarks: 11.0.2
  - calendar: 3.5.0
  - circles: 24.0.1
  - cloud_federation_api: 1.7.0
  - contacts: 4.2.1
  - dashboard: 7.4.0
  - dav: 1.22.0
  - drawio: 1.0.3
  - duplicatefinder: 0.0.15
  - encryption: 2.12.0
  - event_update_notification: 1.5.0
  - extract: 1.3.5
  - federatedfilesharing: 1.14.0
  - files: 1.19.0
  - files_markdown: 2.3.6
  - files_pdfviewer: 2.5.0
  - files_rightclick: 1.3.0
  - files_sharing: 1.16.2
  - files_trashbin: 1.14.0
  - files_versions: 1.17.0
  - files_videoplayer: 1.13.0
  - firstrunwizard: 2.13.0
  - flow_notifications: 1.4.0
  - gpxpod: 4.3.0
  - group_default_quota: 0.1.4
  - group_everyone: 0.1.10
  - groupfolders: 12.0.1
  - groupquota: 0.1.8
  - impersonate: 1.11.0
  - lookup_server_connector: 1.12.0
  - metadata: 0.16.0
  - news: 18.1.1
  - nextcloud_announcements: 1.13.0
  - notifications: 2.12.1
  - oauth2: 1.12.0
  - onlyoffice: 7.5.4
  - password_policy: 1.14.0
  - passwords: 2022.9.20
  - photos: 1.6.0
  - provisioning_api: 1.14.0
  - quota_warning: 1.14.0
  - ransomware_protection: 1.13.0
  - recommendations: 1.3.0
  - serverinfo: 1.14.0
  - settings: 1.6.0
  - sharebymail: 1.14.0
  - spreed: 14.0.5
  - suspicious_login: 4.2.0
  - systemtags: 1.14.0
  - tasks: 0.14.4
  - text: 3.5.1
  - theming: 1.15.0
  - twofactor_backupcodes: 1.13.0
  - twofactor_email: 2.7.0
  - twofactor_gateway: 0.20.0
  - twofactor_nextcloud_notification: 3.4.0
  - twofactor_totp: 6.4.0
  - twofactor_webauthn: 0.3.1
  - updatenotification: 1.14.0
  - user_status: 1.4.0
  - user_usage_report: 1.8.0
  - viewer: 1.8.0
  - welcome: 1.0.1
  - workflowengine: 2.6.0
Disabled:
  - admin_notifications: 1.0.2
  - analytics: 4.4.0
  - appointments: 1.12.8
  - apporder: 0.15.0
  - bruteforcesettings: 2.4.0
  - carnet: 0.24.5
  - cms_pico: 1.0.19
  - collectives: 1.5.0
  - comments: 1.11.0
  - contactsinteraction: 1.2.0
  - cookbook: 0.9.15
  - cospend: 1.4.10
  - deck: 1.7.1
  - electronicsignatures: 2.0.1
  - external: 4.0.0
  - facerecognition
  - federation: 1.11.0
  - files_antivirus: 3.3.1
  - files_downloadactivity: 1.13.0
  - files_external: 1.8.0
  - files_external_gdrive: 0.4.0
  - files_fulltextsearch: 24.0.1
  - files_mindmap: 0.0.26
  - files_photospheres: 1.24.1
  - files_trackdownloads: 1.11.0
  - forms: 2.5.1
  - fulltextsearch: 24.0.0
  - gestion: 2.1.7
  - guests: 2.2.0
  - health: 1.5.1
  - integration_google: 1.0.8
  - integration_whiteboard: 0.0.14
  - keeweb: 0.6.9
  - logreader: 2.6.0
  - mail: 1.13.8
  - maps: 0.2.1
  - notes: 4.5.1
  - ocdownloader: 1.8.1
  - phonetrack: 0.7.0
  - piwik: 0.10.0
  - polls: 3.8.0
  - privacy: 1.5.0
  - quicknotes: 0.8.1
  - recognize: 1.6.10
  - socialsharing_email: 2.5.0
  - souvenirs: 1.6.1
  - support: 1.4.0
  - survey_client: 1.7.0
  - talk_simple_poll: 1.3.1
  - timemanager: 0.3.3
  - timetracker: 0.0.75
  - transmission: 0.7.2
  - twofactor_admin: 3.2.0
  - unsplash: 1.2.5
  - user_ispconfig: 0.4.10
  - user_ldap
  - video_converter: 1.0.5
  - weather: 1.7.6
  - weather_status: 1.1.0
  - workflow_ocr: 1.24.4

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