[Bug]: SQLite error when upgrading from 28.0.4 to 29.0.1

⚠️ This issue respects the following points: ⚠️

[X] This is a bug, not a question or a configuration/webserver/proxy issue.
[X] This issue is not already reported on Github OR Nextcloud Community Forum (I've searched it).
[X] Nextcloud Server is up to date. See Maintenance and Release Schedule for supported versions.
[X] I agree to follow Nextcloud's Code of Conduct.

Bug description

occ upgrade fails wiith : An exception occurred while executing a query: SQLSTATE[HY000]: General error: 1 no such column: \"-1\" - should this be a string literal in single-quotes?

Using pkg version on FreeBSD

Steps to reproduce

SQLite used as database

Installl nextcloud-php82-28.0.4
run pkg upgrade to update to 29.0.1
run occ upgrade

On another system I see the same error when updating from 28.0.3 to 28.0.6 and in nextcloud.log it reports the following query for the error: SELECT t.name AS table_name,\n p.*\n FROM sqlite_master t\n JOIN pragma_foreign_key_list (t.name) p\n ON p.\"seq\" != \"-1\" WHERE t.type = 'table' AND t.name NOT IN ('geometry_columns', 'spatial_ref_sys', 'sqlite_sequence') ORDER BY t.name, p.id DESC, p.seq",[],[],null]},{"fi le":"/www/sites/vanderzwan/nextcloud/3rdparty/doctrine/dbal/src/Schema/SqliteSchemaManager.php","line":763,"function":"executeQuery","class":"OC\\DB\\Connection","type":"->","args":[" SELECT t .name AS table_name,\n p.*\n FROM sqlite_master t\n JOIN pragma_foreign_key_list(t.name) p\n ON p.\"seq\" != \"-1\" WHERE t.type = 'table' AND t .name NOT IN ('geometry_columns', 'spatial_ref_sys', 'sqlite_sequence') ORDER BY t.name, p.id DESC, p.seq

Expected behavior

occ upgrade completed without database exceptions

Installation method

None

Nextcloud Server version

Operating system

Other

PHP engine version

PHP 8.2

Web server

Apache (supported)

Database engine version

SQlite

Is this bug present after an update or on a fresh install?

Updated from a MINOR version (ex. 22.1 to 22.2)

Are you using the Nextcloud Server Encryption module?

None

What user-backends are you using?

[X] Default user-backend (database)
[ ] LDAP/ Active Directory
[ ] SSO - SAML
[ ] Other

Configuration report

{
    "system": {
        "apps_paths": [
            {
                "path": "\/usr\/local\/www\/nextcloud\/apps",
                "url": "\/apps",
                "writable": true
            },
            {
                "path": "\/usr\/local\/www\/nextcloud\/apps-pkg",
                "url": "\/apps-pkg",
                "writable": false
            }
        ],
        "logfile": "\/var\/log\/nextcloud\/nextcloud.log",
        "memcache.local": "\\OC\\Memcache\\APCu",
        "passwordsalt": "***REMOVED SENSITIVE VALUE***",
        "secret": "***REMOVED SENSITIVE VALUE***",
        "trusted_domains": [
            "mlz.vanderzwan.org"
        ],
        "datadirectory": "***REMOVED SENSITIVE VALUE***",
        "dbtype": "sqlite",
        "version": "28.0.4.1",
        "overwrite.cli.url": "http:\/\/localhost",
        "overwriteprotocol": "https",
        "dbname": "***REMOVED SENSITIVE VALUE***",
        "installed": true,
        "instanceid": "***REMOVED SENSITIVE VALUE***",
        "trusted_proxies": "***REMOVED SENSITIVE VALUE***",
        "mail_smtpmode": "smtp",
        "mail_sendmailmode": "smtp",
        "mail_from_address": "***REMOVED SENSITIVE VALUE***",
        "mail_domain": "***REMOVED SENSITIVE VALUE***",
        "mail_smtphost": "***REMOVED SENSITIVE VALUE***",
        "bulkupload.enabled": true,
        "loglevel": 0,
        "logtimezone": "CET",
        "maintenance": false,
        "default_phone_region": "nl",
        "theme": ""
    }
}

List of activated Apps

Enabled:
  - activity: 2.20.0
  - admin_audit: 1.18.0
  - bruteforcesettings: 2.8.0
  - cloud_federation_api: 1.11.0
  - dav: 1.29.1
  - federatedfilesharing: 1.18.0
  - files: 2.0.0
  - files_reminders: 1.1.0
  - files_sharing: 1.20.0
  - files_trashbin: 1.18.0
  - files_versions: 1.21.0
  - firstrunwizard: 2.17.0
  - logreader: 2.13.0
  - lookup_server_connector: 1.16.0
  - nextcloud_announcements: 1.17.0
  - notifications: 2.16.0
  - oauth2: 1.16.3
  - photos: 2.4.0
  - privacy: 1.12.0
  - provisioning_api: 1.18.0
  - quota_warning: 1.19.0
  - serverinfo: 1.18.0
  - settings: 1.10.1
  - support: 1.11.1
  - text: 3.9.1
  - theming: 2.3.0
  - twofactor_backupcodes: 1.17.0
  - updatenotification: 1.18.0
  - user_status: 1.8.1
  - viewer: 2.2.0
  - workflowengine: 2.10.0
Disabled:
  - circles: 28.0.0 (installed 25.0.0)
  - comments: 1.18.0 (installed 1.15.0)
  - contactsinteraction: 1.9.0 (installed 1.6.0)
  - dashboard: 7.8.0 (installed 7.5.0)
  - encryption: 2.16.0
  - federation: 1.18.0 (installed 1.15.0)
  - files_external: 1.20.0 (installed 1.17.0)
  - files_pdfviewer: 2.9.0 (installed 2.6.0)
  - password_policy: 1.18.0 (installed 1.15.0)
  - recommendations: 2.0.0 (installed 1.4.0)
  - related_resources: 1.3.0 (installed 1.0.3)
  - sharebymail: 1.18.0 (installed 1.15.0)
  - survey_client: 1.16.0 (installed 1.13.0)
  - suspicious_login: 6.0.0
  - systemtags: 1.18.0 (installed 1.15.0)
  - twofactor_totp: 10.0.0-beta.2
  - user_ldap: 1.19.0
  - weather_status: 1.8.0 (installed 1.5.0)

Nextcloud Signing status

No response

Nextcloud Logs

No response

Additional info

No response

nextcloud / server