search

nextflow-io / cwl2nxf

Import a CWL workflow specification to Nextflow script (experimental)
Apache License 2.0
27 stars 5 forks source link

Array inputs parsed for command line creation #10

Closed KevinSayers closed 7 years ago

KevinSayers commented 7 years ago

Currently array inputs do not get added to the command line. This appears to be based on the 'inputBinding' for arrays being one level lower, and therefore the logic to check if there is a position turns up no position.

KevinSayers commented 7 years ago

This should now be implemented. The parser checks if inputBinding is found at the current map level, and then also checks if it is found under the type key.