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nextflow-io / cwl2nxf

Import a CWL workflow specification to Nextflow script (experimental)
Apache License 2.0
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Javascript implement runtime variables #14

Closed KevinSayers closed 7 years ago

KevinSayers commented 7 years ago

Ensure the following runtime variables are all handled correctly. Currently outdir is implemented for Step class extractArguments method. 

runtime.outdir: an absolute path to the designated output directory
runtime.tmpdir: an absolute path to the designated temporary directory
runtime.cores: number of CPU cores reserved for the tool process
runtime.ram: amount of RAM in mebibytes (2**20) reserved for the tool process
runtime.outdirSize: reserved storage space available in the designated output directory
runtime.tmpdirSize: reserved storage space available in the designated temporary directory
KevinSayers commented 7 years ago

these have been implemented and should parse correctly now.