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nextflow-io / cwl2nxf

Import a CWL workflow specification to Nextflow script (experimental)
Apache License 2.0
27 stars 5 forks source link

Secondary files #4

Open KevinSayers opened 7 years ago

KevinSayers commented 7 years ago

Add support for CWL secondary files. These files are files which must be present in the processing folder, but are not necessarily inputs. In nextflow these files should just be listed as inputs I believe so they are copied into the working directory.

KevinSayers commented 7 years ago

secondary files should also be handled from the input parameters file. Shown as part of a list below. 

    - [{class: File, path: bar.file, secondaryFiles: [{class: File, path: foo.file}]}]