Capsule Exception caused by java.io.IOException

Bug report

Attempting to run nextflow causes a Capsule Exception.

Expected behavior and actual behavior

The expected bevaior would be initializing and running Nextflow. Instead, a Capsule Exception is thrown, and when I check it with a verbose log, it shows it is "caused by" a variety of Java errors that appear to stem from an IO Exception.

Steps to reproduce the problem

The initial problem appears with any command that starts with 'nextflow'. Running 'nextflow -Dcapsule.log=verbose info' gets the mord detailed output seen below.

Program output

For 'nextflow': CAPSULE: Downloading dependency org.multiverse:multiverse-core:jar:0.7.0 CAPSULE: Downloading dependency org.apache.ivy:ivy:jar:2.5.1 CAPSULE: Downloading dependency org.slf4j:jul-to-slf4j:jar:1.7.36 CAPSULE: Downloading dependency org.codehaus.groovy:groovy-templates:jar:3.0.16 CAPSULE: Downloading dependency org.slf4j:jcl-over-slf4j:jar:1.7.36 CAPSULE: Downloading dependency commons-io:commons-io:jar:2.11.0 CAPSULE: Downloading dependency org.codehaus.jsr166-mirror:jsr166y:jar:1.7.0 CAPSULE: Downloading dependency commons-codec:commons-codec:jar:1.15 CAPSULE: Downloading dependency com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava CAPSULE: Downloading dependency ch.artecat.grengine:grengine:jar:3.0.0 CAPSULE: Downloading dependency com.beust:jcommander:jar:1.35 CAPSULE: Downloading dependency io.nextflow:nf-httpfs:jar:23.04.3 CAPSULE: Downloading dependency jline:jline:jar:2.9 CAPSULE: Downloading dependency io.nextflow:nf-commons:jar:23.04.3 CAPSULE: Downloading dependency ch.qos.logback:logback-core:jar:1.2.11 CAPSULE: Downloading dependency com.github.zafarkhaja:java-semver:jar:0.9.0 CAPSULE: Downloading dependency javax.mail:mail:jar:1.4.7 CAPSULE: Downloading dependency org.codehaus.groovy:groovy-json:jar:3.0.16 CAPSULE: Downloading dependency org.eclipse.jgit:org.eclipse.jgit:jar:6.2.0.202206071550-r CAPSULE: Downloading dependency com.google.code.findbugs:jsr305:jar:3.0.2 CAPSULE: Downloading dependency org.codehaus.groovy:groovy:jar:3.0.16 CAPSULE: Downloading dependency commons-lang:commons-lang:jar:2.6 CAPSULE: Downloading dependency org.iq80.leveldb:leveldb-api:jar:0.12 CAPSULE: Downloading dependency org.codehaus.gpars:gpars:jar:1.2.1 CAPSULE: Downloading dependency ch.qos.logback:logback-classic:jar:1.2.11 CAPSULE: Downloading dependency org.jsoup:jsoup:jar:1.15.4 CAPSULE: Downloading dependency org.slf4j:log4j-over-slf4j:jar:1.7.36 CAPSULE: Downloading dependency com.google.guava:guava:jar:31.1-jre CAPSULE: Downloading dependency org.objenesis:objenesis:jar:2.1 CAPSULE: Downloading dependency com.esotericsoftware.kryo:kryo:jar:2.24.0 CAPSULE: Downloading dependency org.slf4j:slf4j-api:jar:1.7.36 CAPSULE: Downloading dependency org.yaml:snakeyaml:jar:2.0 CAPSULE: Downloading dependency com.google.code.gson:gson:jar:2.10.1 CAPSULE: Downloading dependency com.google.errorprone:error_prone_annotations:jar:2.11.0 CAPSULE: Downloading dependency org.codehaus.groovy:groovy-nio:jar:3.0.16 CAPSULE: Downloading dependency dev.failsafe:failsafe:jar:3.1.0 CAPSULE: Downloading dependency com.google.j2objc:j2objc-annotations:jar:1.3 CAPSULE: Downloading dependency io.nextflow:nextflow:jar:23.04.3 CAPSULE: Downloading dependency javax.activation:activation:jar:1.1.1 CAPSULE: Downloading dependency org.codehaus.groovy:groovy-xml:jar:3.0.16 CAPSULE: Downloading dependency org.pf4j:pf4j:jar:3.4.1 CAPSULE: Downloading dependency org.iq80.leveldb:leveldb:jar:0.12 CAPSULE: Downloading dependency com.google.guava:failureaccess:jar:1.0.1 CAPSULE: Downloading dependency com.googlecode.javaewah:JavaEWAH:jar:1.1.13 CAPSULE: Downloading dependency org.checkerframework:checker-qual:jar:3.12.0 CAPSULE: Downloading dependency org.pf4j:pf4j-update:jar:2.3.0 CAPSULE EXCEPTION: Error resolving dependencies. while processing attribute Allow-Snapshots: false (for stack trace, run with -Dcapsule.log=verbose) Unable to initialize nextflow environment

For 'nextflow -Dcapsule.log=verbose info': (note: I had to truncate this output because it was too long to fit in my Command Prompt window): CAPSULE: Transfer failed: capsule.org.eclipse.aether.transfer.ArtifactTransferException: Could not transfer artifact com.googlecode.javaewah:JavaEWAH:jar:1.1.13 from/to central (https://repo1.maven.org/maven2/): java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) capsule.org.eclipse.aether.transfer.ArtifactTransferException: Could not transfer artifact com.googlecode.javaewah:JavaEWAH:jar:1.1.13 from/to central (https://repo1.maven.org/maven2/): java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at capsule.org.eclipse.aether.connector.basic.ArtifactTransportListener.transferFailed(ArtifactTransportListener.java:43) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run(BasicRepositoryConnector.java:355) at capsule.org.eclipse.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:67) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: java.net.SocketException: java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at java.base/javax.net.ssl.DefaultSSLSocketFactory.throwException(SSLSocketFactory.java:263) at java.base/javax.net.ssl.DefaultSSLSocketFactory.createSocket(SSLSocketFactory.java:270) at capsule.org.apache.http.conn.ssl.SSLSocketFactory.createSocket(SSLSocketFactory.java:505) at capsule.org.apache.http.conn.ssl.SSLSocketFactory.createSocket(SSLSocketFactory.java:377) at capsule.org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:165) at capsule.org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304) at capsule.org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:611) at capsule.org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:446) at capsule.org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863) at capsule.org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:72) at capsule.org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57) at capsule.org.apache.http.impl.client.DecompressingHttpClient.execute(DecompressingHttpClient.java:158) at capsule.org.eclipse.aether.transport.http.HttpTransporter.execute(HttpTransporter.java:318) at capsule.org.eclipse.aether.transport.http.HttpTransporter.implGet(HttpTransporter.java:274) at capsule.org.eclipse.aether.spi.connector.transport.AbstractTransporter.get(AbstractTransporter.java:59) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask(BasicRepositoryConnector.java:447) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run(BasicRepositoryConnector.java:350) ... 4 more Caused by: java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at java.base/java.security.Provider$Service.newInstance(Provider.java:1901) at java.base/sun.security.jca.GetInstance.getInstance(GetInstance.java:236) at java.base/sun.security.jca.GetInstance.getInstance(GetInstance.java:164) at java.base/javax.net.ssl.SSLContext.getInstance(SSLContext.java:168) at java.base/javax.net.ssl.SSLContext.getDefault(SSLContext.java:99) at java.base/javax.net.ssl.SSLSocketFactory.getDefault(SSLSocketFactory.java:123) at capsule.org.eclipse.aether.transport.http.SslSocketFactory.getSocketFactory(SslSocketFactory.java:45) at capsule.org.eclipse.aether.transport.http.SslSocketFactory.<init>(SslSocketFactory.java:39) at capsule.org.eclipse.aether.transport.http.GlobalState.newConnectionManager(GlobalState.java:166) at capsule.org.eclipse.aether.transport.http.LocalState.<init>(LocalState.java:59) at capsule.org.eclipse.aether.transport.http.HttpTransporter.<init>(HttpTransporter.java:130) at capsule.org.eclipse.aether.transport.http.HttpTransporterFactory.newInstance(HttpTransporterFactory.java:93) at capsule.org.eclipse.aether.internal.impl.DefaultTransporterProvider.newTransporter(DefaultTransporterProvider.java:110) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnector.<init>(BasicRepositoryConnector.java:115) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnectorFactory.newInstance(BasicRepositoryConnectorFactory.java:180) at capsule.org.eclipse.aether.internal.impl.DefaultRepositoryConnectorProvider.newRepositoryConnector(DefaultRepositoryConnectorProvider.java:113) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads(DefaultArtifactResolver.java:516) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:421) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:246) at capsule.org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:373) at capsule.DependencyManager.resolve0(DependencyManager.java:377) at capsule.DependencyManager.resolveDependencies(DependencyManager.java:314) at MavenCapsule.resolve0(MavenCapsule.java:224) at Capsule.resolve(Capsule.java:3375) at Capsule.resolve(Capsule.java:3389) at Capsule.buildJavaProcess(Capsule.java:2228) at Capsule.buildProcess0(Capsule.java:1530) at Capsule.buildProcess(Capsule.java:1521) at Capsule.buildProcess(Capsule.java:1521) at Capsule.buildProcess(Capsule.java:1521) at Capsule.prelaunch0(Capsule.java:1494) at Capsule.prelaunch(Capsule.java:1487) at NextflowLoader.prelaunch(NextflowLoader.java:42) at Capsule.prepareForLaunch(Capsule.java:1339) at Capsule.launch(Capsule.java:1268) at Capsule.main0(Capsule.java:399) at Capsule.main(Capsule.java:379) Caused by: java.security.KeyStoreException: problem accessing trust store at java.base/sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:73) at java.base/javax.net.ssl.TrustManagerFactory.init(TrustManagerFactory.java:278) at java.base/sun.security.ssl.SSLContextImpl$DefaultManagersHolder.getTrustManagers(SSLContextImpl.java:1053) at java.base/sun.security.ssl.SSLContextImpl$DefaultManagersHolder.<clinit>(SSLContextImpl.java:1023) at java.base/sun.security.ssl.SSLContextImpl$DefaultSSLContext.<init>(SSLContextImpl.java:1198) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490) at java.base/java.security.Provider.newInstanceUtil(Provider.java:154) at java.base/java.security.Provider$Service.newInstance(Provider.java:1894) at java.base/sun.security.jca.GetInstance.getInstance(GetInstance.java:236) at java.base/sun.security.jca.GetInstance.getInstance(GetInstance.java:164) at java.base/javax.net.ssl.SSLContext.getInstance(SSLContext.java:168) at java.base/javax.net.ssl.SSLContext.getDefault(SSLContext.java:99) at java.base/javax.net.ssl.SSLSocketFactory.getDefault(SSLSocketFactory.java:123) at capsule.org.eclipse.aether.transport.http.SslSocketFactory.getSocketFactory(SslSocketFactory.java:45) at capsule.org.eclipse.aether.transport.http.SslSocketFactory.<init>(SslSocketFactory.java:39) at capsule.org.eclipse.aether.transport.http.GlobalState.newConnectionManager(GlobalState.java:166) at capsule.org.eclipse.aether.transport.http.LocalState.<init>(LocalState.java:59) at capsule.org.eclipse.aether.transport.http.HttpTransporter.<init>(HttpTransporter.java:130) at capsule.org.eclipse.aether.transport.http.HttpTransporterFactory.newInstance(HttpTransporterFactory.java:93) at capsule.org.eclipse.aether.internal.impl.DefaultTransporterProvider.newTransporter(DefaultTransporterProvider.java:110) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnector.<init>(BasicRepositoryConnector.java:115) at capsule.org.eclipse.aether.connector.basic.BasicRepositoryConnectorFactory.newInstance(BasicRepositoryConnectorFactory.java:180) at capsule.org.eclipse.aether.internal.impl.DefaultRepositoryConnectorProvider.newRepositoryConnector(DefaultRepositoryConnectorProvider.java:113) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads(DefaultArtifactResolver.java:516) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:421) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:246) at capsule.org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:223) at capsule.org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:267) at capsule.org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor(DefaultArtifactDescriptorReader.java:198) at capsule.org.eclipse.aether.internal.impl.DefaultDependencyCollector.resolveCachedArtifactDescriptor(DefaultDependencyCollector.java:535) at capsule.org.eclipse.aether.internal.impl.DefaultDependencyCollector.getArtifactDescriptorResult(DefaultDependencyCollector.java:519) at capsule.org.eclipse.aether.internal.impl.DefaultDependencyCollector.processDependency(DefaultDependencyCollector.java:409) at capsule.org.eclipse.aether.internal.impl.DefaultDependencyCollector.processDependency(DefaultDependencyCollector.java:363) at capsule.org.eclipse.aether.internal.impl.DefaultDependencyCollector.process(DefaultDependencyCollector.java:351) at capsule.org.eclipse.aether.internal.impl.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:254) at capsule.org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:341) ... 17 more Caused by: java.io.IOException: toDerInputStream rejects tag type 35 at java.base/sun.security.util.DerValue.toDerInputStream(DerValue.java:858) at java.base/sun.security.pkcs12.PKCS12KeyStore.engineLoad(PKCS12KeyStore.java:1974) at java.base/sun.security.util.KeyStoreDelegator.engineLoad(KeyStoreDelegator.java:222) at java.base/java.security.KeyStore.load(KeyStore.java:1479) at java.base/sun.security.ssl.TrustStoreManager$TrustAnchorManager.loadKeyStore(TrustStoreManager.java:365) at java.base/sun.security.ssl.TrustStoreManager$TrustAnchorManager.getTrustedCerts(TrustStoreManager.java:313) at java.base/sun.security.ssl.TrustStoreManager.getTrustedCerts(TrustStoreManager.java:55) at java.base/sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:49) ... 55 more CAPSULE: Cleanup CAPSULE EXCEPTION: Error resolving dependencies. while processing attribute Allow-Snapshots: false java.lang.RuntimeException: Error resolving dependencies. at capsule.DependencyManager.resolve0(DependencyManager.java:382) at capsule.DependencyManager.resolveDependencies(DependencyManager.java:314) at MavenCapsule.resolve0(MavenCapsule.java:224) at Capsule.resolve(Capsule.java:3375) at Capsule.resolve(Capsule.java:3389) at Capsule.buildJavaProcess(Capsule.java:2228) at Capsule.buildProcess0(Capsule.java:1530) at Capsule.buildProcess(Capsule.java:1521) at Capsule.buildProcess(Capsule.java:1521) at Capsule.buildProcess(Capsule.java:1521) at Capsule.prelaunch0(Capsule.java:1494) at Capsule.prelaunch(Capsule.java:1487) at NextflowLoader.prelaunch(NextflowLoader.java:42) at Capsule.prepareForLaunch(Capsule.java:1339) at Capsule.launch(Capsule.java:1268) at Capsule.main0(Capsule.java:399) at Capsule.main(Capsule.java:379) Caused by: capsule.org.eclipse.aether.resolution.DependencyResolutionException: Failed to collect dependencies at org.multiverse:multiverse-core:jar:0.7.0 at org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:387) at capsule.DependencyManager.resolve0(DependencyManager.java:377) ... 16 more Caused by: capsule.org.eclipse.aether.collection.DependencyCollectionException: Failed to collect dependencies at org.multiverse:multiverse-core:jar:0.7.0 at org.eclipse.aether.internal.impl.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:291) at org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveDependencies(DefaultRepositorySystem.java:341) ... 17 more Caused by: capsule.org.eclipse.aether.resolution.ArtifactDescriptorException: Failed to read artifact descriptor for org.multiverse:multiverse-core:jar:0.7.0 at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:282) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor(DefaultArtifactDescriptorReader.java:198) at org.eclipse.aether.internal.impl.DefaultDependencyCollector.resolveCachedArtifactDescriptor(DefaultDependencyCollector.java:535) at org.eclipse.aether.internal.impl.DefaultDependencyCollector.getArtifactDescriptorResult(DefaultDependencyCollector.java:519) at org.eclipse.aether.internal.impl.DefaultDependencyCollector.processDependency(DefaultDependencyCollector.java:409) at org.eclipse.aether.internal.impl.DefaultDependencyCollector.processDependency(DefaultDependencyCollector.java:363) at org.eclipse.aether.internal.impl.DefaultDependencyCollector.process(DefaultDependencyCollector.java:351) at org.eclipse.aether.internal.impl.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:254) ... 18 more Caused by: capsule.org.eclipse.aether.resolution.ArtifactResolutionException: Could not transfer artifact org.multiverse:multiverse-core:pom:0.7.0 from/to central (https://repo1.maven.org/maven2/): java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:444) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:246) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:223) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:267) ... 25 more Caused by: capsule.org.eclipse.aether.transfer.ArtifactTransferException: Could not transfer artifact org.multiverse:multiverse-core:pom:0.7.0 from/to central (https://repo1.maven.org/maven2/): java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at org.eclipse.aether.connector.basic.ArtifactTransportListener.transferFailed(ArtifactTransportListener.java:43) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run(BasicRepositoryConnector.java:355) at org.eclipse.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:67) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$DirectExecutor.execute(BasicRepositoryConnector.java:581) at org.eclipse.aether.connector.basic.BasicRepositoryConnector.get(BasicRepositoryConnector.java:249) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads(DefaultArtifactResolver.java:520) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:421) ... 28 more Caused by: java.net.SocketException: java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at javax.net.ssl.DefaultSSLSocketFactory.throwException(SSLSocketFactory.java:263) at javax.net.ssl.DefaultSSLSocketFactory.createSocket(SSLSocketFactory.java:270) at org.apache.http.conn.ssl.SSLSocketFactory.createSocket(SSLSocketFactory.java:505) at org.apache.http.conn.ssl.SSLSocketFactory.createSocket(SSLSocketFactory.java:377) at org.apache.http.impl.conn.DefaultClientConnectionOperator.openConnection(DefaultClientConnectionOperator.java:165) at org.apache.http.impl.conn.ManagedClientConnectionImpl.open(ManagedClientConnectionImpl.java:304) at org.apache.http.impl.client.DefaultRequestDirector.tryConnect(DefaultRequestDirector.java:611) at org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:446) at org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863) at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:72) at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57) at org.apache.http.impl.client.DecompressingHttpClient.execute(DecompressingHttpClient.java:158) at org.eclipse.aether.transport.http.HttpTransporter.execute(HttpTransporter.java:318) at org.eclipse.aether.transport.http.HttpTransporter.implGet(HttpTransporter.java:274) at org.eclipse.aether.spi.connector.transport.AbstractTransporter.get(AbstractTransporter.java:59) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask(BasicRepositoryConnector.java:447) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run(BasicRepositoryConnector.java:350) ... 33 more Caused by: java.security.NoSuchAlgorithmException: Error constructing implementation (algorithm: Default, provider: SunJSSE, class: sun.security.ssl.SSLContextImpl$DefaultSSLContext) at java.security.Provider$Service.newInstance(Provider.java:1901) at sun.security.jca.GetInstance.getInstance(GetInstance.java:236) at sun.security.jca.GetInstance.getInstance(GetInstance.java:164) at javax.net.ssl.SSLContext.getInstance(SSLContext.java:168) at javax.net.ssl.SSLContext.getDefault(SSLContext.java:99) at javax.net.ssl.SSLSocketFactory.getDefault(SSLSocketFactory.java:123) at org.eclipse.aether.transport.http.SslSocketFactory.getSocketFactory(SslSocketFactory.java:45) at org.eclipse.aether.transport.http.SslSocketFactory.<init>(SslSocketFactory.java:39) at org.eclipse.aether.transport.http.GlobalState.newConnectionManager(GlobalState.java:166) at org.eclipse.aether.transport.http.LocalState.<init>(LocalState.java:59) at org.eclipse.aether.transport.http.HttpTransporter.<init>(HttpTransporter.java:130) at org.eclipse.aether.transport.http.HttpTransporterFactory.newInstance(HttpTransporterFactory.java:93) at org.eclipse.aether.internal.impl.DefaultTransporterProvider.newTransporter(DefaultTransporterProvider.java:110) at org.eclipse.aether.connector.basic.BasicRepositoryConnector.<init>(BasicRepositoryConnector.java:115) at org.eclipse.aether.connector.basic.BasicRepositoryConnectorFactory.newInstance(BasicRepositoryConnectorFactory.java:180) at org.eclipse.aether.internal.impl.DefaultRepositoryConnectorProvider.newRepositoryConnector(DefaultRepositoryConnectorProvider.java:113) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads(DefaultArtifactResolver.java:516) ... 29 more Caused by: java.security.KeyStoreException: problem accessing trust store at sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:73) at javax.net.ssl.TrustManagerFactory.init(TrustManagerFactory.java:278) at sun.security.ssl.SSLContextImpl$DefaultManagersHolder.getTrustManagers(SSLContextImpl.java:1053) at sun.security.ssl.SSLContextImpl$DefaultManagersHolder.<clinit>(SSLContextImpl.java:1023) at sun.security.ssl.SSLContextImpl$DefaultSSLContext.<init>(SSLContextImpl.java:1198) at jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:490) at java.security.Provider.newInstanceUtil(Provider.java:154) at java.security.Provider$Service.newInstance(Provider.java:1894) ... 45 more Caused by: java.io.IOException: toDerInputStream rejects tag type 35 at sun.security.util.DerValue.toDerInputStream(DerValue.java:858) at sun.security.pkcs12.PKCS12KeyStore.engineLoad(PKCS12KeyStore.java:1974) at sun.security.util.KeyStoreDelegator.engineLoad(KeyStoreDelegator.java:222) at java.security.KeyStore.load(KeyStore.java:1479) at sun.security.ssl.TrustStoreManager$TrustAnchorManager.loadKeyStore(TrustStoreManager.java:365) at sun.security.ssl.TrustStoreManager$TrustAnchorManager.getTrustedCerts(TrustStoreManager.java:313) at sun.security.ssl.TrustStoreManager.getTrustedCerts(TrustStoreManager.java:55) at sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:49) ... 55 more Unable to initialize nextflow environment

Environment

Nextflow version: I can't check because 'nextflow -v' also throws the above error
Java version: 11.0.13
Operating system: Linux
Bash version: 'command not found'

nextflow-io / nextflow