Closed setshabaTaukobong closed 10 months ago
Hi, I have not solved this issue as yet. Not sure why its closed
Because it's unreadable. Consider posting on https://community.seqera.io/
HI @setshabaTaukobong , I edited your post to be more readable. You just need to use triple backticks for code blocks
Based on your error I think you need to fix your FASTQC2
process as follows:
process FASTQC2 {
debug true
input:
path sample_id2
output:
path "${sample_id2}_fastqc.html", emit: fastqc_files2
script:
"""
fastqc $sample_id2 -t 4
"""
}
Hi there, I am trying to do genome assembly using several tools and the below script:
The script works however once it gets to 5th process (FASTQC2), it gives me the following error even though the output file is generated but also the script stops running:
Could I get some assistance on this. Not sure what the problem might be. Thank you.