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nextflow-io / nextflow

A DSL for data-driven computational pipelines
http://nextflow.io
Apache License 2.0
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storeDir and privileges #893

Closed lucacozzuto closed 5 years ago

lucacozzuto commented 5 years ago

Bug report

I found a strange behaviour when using storeDir. I got this error:

[21/950f45] NOTE: Cannot access folder: '/nfs/software/bi/biocore_tools/git/nextflow/Qcloud/blastdb' -- Error is ignored

Expected behavior and actual behavior

I fixed this by using afterScript and changing the mode to 777 but the privileges of the stored folder are actually the same than work folder. So I don't know why is complaining.

pditommaso commented 5 years ago

I guess this is some kind of mess in the shared file system or made by the container mount. Not enough evidence to replicate it.