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nextflow-io / nf-hack17

Nextflow hackathon 2017 projects
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Project 2: Variant Calling pipeline for RNA data #2

Open pditommaso opened 7 years ago

pditommaso commented 7 years ago

Project

Implementation of a Variant Calling analisys pipeline for RNAseq data based on GATK best practices and using Nextflow as pipeline framework.

This is supposed to be a tutorial project for newbie Nextflow users how are interested to learn how to assemble a real world genomic pipeline, manage dependencies by using container technology (Docker & Singularity) and deploy the pipeline execution in a reproducible manner in the AWS cloud.

The participants will need to assemble the pipeline on their own following the documentation provided at this link.

jordeu commented 7 years ago

Hi, I would like to attend this project Jordi Deu-Pons (IRB Barcelona)

davidmasp commented 7 years ago

Hi! David Mas-Ponte (IRB)

apeltzer commented 7 years ago

Hi, would like to participate here, too. Alex Peltzer (QBIC) .

coughls commented 7 years ago

Hi, I would like to attend this as well. Simone Coughlan (GMI)

simaju commented 7 years ago

Hi, I'd like to join this project. Sini Junttila (VBCF)

dgarrimar commented 7 years ago

Hi! I'm in for this one too ;) Diego Garrido Martín (CRG)

bborsari commented 7 years ago

Beatrice Borsari (CRG)

alopezdoriga commented 7 years ago

Hi! I would like to attend this project too. Adriana Lopez-Doriga (ICO)

CRusso2017 commented 7 years ago

Hello. I would like to attend this session. (Christophe Russo, CHU Liège)

andreas-wilm commented 7 years ago

I'd like to attend. Andreas Wilm (Genome Institute of Singapore). Thanks

(PS: Also signed up for Newbie Project 1. If we're supposed to pick only one, I'd go for this, i.e. Project 2)

arnaudceol commented 7 years ago

I would like to attend this one

PabloLatorre commented 7 years ago

HI! I would like to attend this project. Pablo Latorre (DCEXS-UPF) Thanks