Project 6: ChIPseq comparative pipeline

[lucacozzuto]

Project

ChIPseq comparative pipeline for benchmarking procedures:

• The pipeline will run combination of tools for both mapping and peak calling
• The output of every combination should be standardized
• There should be some kind of metrics that can be used for evaluation.

Data:

A number of fastq files (compressed) and genome files (fasta). I estimated around 200 gb

Computing resources:

(to be estimated)

Project Lead:

Luca Cozzuto (@lucacozzuto)