How to handle errors (e.g. component, pipeline and network error) and send error message automatically by email

nextflow-io / nf-hack18

Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/

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Open RTewolde opened 5 years ago

edgano commented 5 years ago

A way to get it is using onError

workflow.onError {
    println "Oops... Pipeline execution stopped with the following message: ${workflow.errorMessage}"
}