Closed matthdsm closed 2 months ago
reproducible on the azure server
Data in assets
also isn't available, effectively breaking multiqc
in all nf-core pipelines
I guess we're still missing something like this: https://github.com/nextflow-io/nextflow/blob/059151a6bad40baedcaaf2b31fa455a951bd420b/plugins/nf-azure/src/main/nextflow/cloud/azure/batch/AzBatchExecutor.groovy#L89-L98
Setting NXF_ASSETS
to a directory mounted by nomad fixes this issue
Yeah, this makes it a good candidate (with workDir
) to perhaps dynamically set this at runtime 🤔
That being said, shall we close this issue?
Closing this as the best way to test the plugin is through https://github.com/nextflow-io/nf-nomad/pull/62#issuecomment-2212482769
And for a released build, the same process should be followed after adding the relevant NXF_*
parameters.
VERSION
0.1.1
CMD
Error
CONFIG