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nextflow-io / patterns

A curated collection of Nextflow implementation patterns
http://nextflow-io.github.io/patterns/
MIT License
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Blast example stuck #6

Closed ai4pharma closed 6 years ago

ai4pharma commented 6 years ago

I'm trying to run blast.nf in my workstation, blast_result and top_hits have been generated, then the project stuck. Any possible reason?

nextflow run examples/blast.nf -with-docker -with-report -with-timeline N E X T F L O W ~ version 0.27.0 Launching examples/blast.nf [small_nightingale] - revision: 7b4b740be4 [warm up] executor > local [94/2ab84a] Submitted process > blast (1)

nextflow info Version: 0.27.0 build 4751 Modified: 09-01-2018 10:18 UTC (05:18 EDT) System: Linux 3.10.0-514.10.2.el7.x86_64 Runtime: Groovy 2.4.13 on OpenJDK 64-Bit Server VM 1.8.0_121-b13 Encoding: UTF-8 (UTF-8)

pditommaso commented 6 years ago

I've seen this problem when there's not enough memory to run the container. Could it be the case?