Use always copy mode at publishDir

nextflow-io / rnaseq-nf

A proof of concept of RNAseq pipeline

Apache License 2.0

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Use always copy mode at publishDir #12

Closed jordeu closed 2 years ago

jordeu commented 2 years ago

There are two modules that use publishDir: fastqc and multiqc. Right now multiqc is using mode copy and fastqc no (so it's creating symbolic links).

This PR is changing fastqc to also use copy mode to be consistent.