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nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
300 stars 82 forks source link

GENMARK #1029

Open ad010902 opened 2 months ago

ad010902 commented 2 months ago

I catch bug as log below:

[Apr 17 11:45 PM]: Can't locate Parallel/ForkManager.pm in @INC (you may need to install the Parallel::ForkManager module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.26.1 /usr/local/share/perl/5.26.1 /usr/lib/x86_64-linux-gnu/perl5/5.26 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.26 /usr/share/perl/5.26 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at /home/duongnguyen/gmes_linux_64/gmes_petap.pl line 89. BEGIN failed--compilation aborted at /home/duongnguyen/gmes_linux_64/gmes_petap.pl line 89.

KristinaGagalova commented 2 months ago

Hi, Looks like you don't have the required perl libraries. Either install ForkManager or use a contaner

IanDMedeiros commented 1 month ago

@ad010902 Did you edit the perl scripts in gmes_linux_64 to use /usr/bin/env perl instead of /usr/bin/perl? That change is probably necessary if you are working in a conda enviornment.