nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
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How can I include the contig from the mitochondrial genome? #1030

Open Antonio-Sanpedro opened 2 months ago

Antonio-Sanpedro commented 2 months ago

During the train/predict stage, I removed the mitochondrial contig. Now, I would like to reintegrate it for submission. I understand that the --mito-pass-thru option serves this purpose. Could someone please indicate the correct syntax of the argument?