isoforms in gff3 - Githubissues

nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline

http://funannotate.readthedocs.io

BSD 2-Clause "Simplified" License

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Open Nitin123-4 opened 2 months ago

Nitin123-4 commented 2 months ago

Funannotate final gff3 has only one transcript information per gene. It doesn't provide alternative splicing/isoforms in the gff file?

hyphaltip commented 1 month ago

Did you run the update step with rnaseq? That is only way alt splicing is incorporated based on evidence.