Closed MinjieHu closed 6 years ago
Problem sovled by update diamond from 0.8.22-2 to 0.9.21-1
Glad you figured out the diamond version problem. Second problem probably tRNAscan installation error. Have a look at the log files which game more information about which commands were run and the errors
It's indeed tRNAscan installation error. It seems that funannotate doesn't check the version tRNAscan. And only when the error turns up, I realized that I didn't install tRNAscan.
By the way, when funannotate try to run interProscan, what file it uses as input? The genome file or the predicted protein file?
It uses the XX.protein.fa file in predict_results folder
On Fri, May 25, 2018 at 8:57 AM ykjyhmj notifications@github.com wrote:
By the way, when funannotate try to run interProscan, what file it uses as input? The genome file or the predicted protein file?
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Just to add a little bit: if you specify the funannotate output directory as input, it will first look in the update_results
folder if it exists, then move onto looking into the predict_results
folder. Otherwise it is expecting a protein sequence FASTA file.
Hi, I tried to annotate my genome with funannotate(v1.3.3). When I run the test run for the sample data, for all the genomes, it stopped at filtering out bad gene models
Thanks for the help!