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nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
322 stars 85 forks source link

EggNog database failed on install #35

Closed nextgenusfs closed 7 years ago

nextgenusfs commented 7 years ago

Hi Jon,

I encountered an issue when installing the funannotate database. I got the error message "Error: File fuOG_4.5.hmm does not appear to be in a recognized HMM format." Iran the command one by one as below but got the same error message. Can you please help me fix it?

tar -zxf fuNOG.hmm.tar.gz
 find fuNOG_hmm/ -maxdepth 1 -type f -name '*.hmm' -exec cat '{}' \; > fuNOG_4.5.hmm
 hmmpress fuNOG_4.5.hmm

Many thanks, Leo

nextgenusfs commented 7 years ago

These appears to have been an hmmer3 issue - but hasn't been confirmed yet. If anybody else has had this problem let me know. But currently installing fine for me.

nextgenusfs commented 7 years ago

This turned out to be a case of root priveliages, user was trying to install the databases in default location on linux /usr/local/share however required root to do that, when switching to root, a different version of hmmer was in the path and thus the error.