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nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
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Busco Viridiplantae Odb10 #656

Open mictadlo opened 2 years ago

mictadlo commented 2 years ago

Hi, How can I add Busco's Viridiplantae Odb10 to funannotate?

Thank you in advance

Michal

hyphaltip commented 2 years ago

you can just download it and refer to the path to it when you run your predict / annotate steps.

hyphaltip commented 2 years ago

But perhaps @nextgenusfs would need to add to this block - it seems like it is archived in an osf.io DOI instead of relying on the busco server https://github.com/nextgenusfs/funannotate/blob/00c207ad4041270a5e0e1f6cff711f697c5d3abc/funannotate/downloads.json#L20

nextgenusfs commented 2 years ago

Yes you should just be able to download the ODB10 folder and put in $FUNANNOTATE_DB location. Note if you are using docker this is obviously more complicated....