Open VDaric opened 1 year ago
You can open funannotate/predict.py script and can see the FILTERGENE condition:
if lib.which("filterGenemark.pl"):
FILTERGENE = "filterGenemark.pl"
else:
FILTERGENE = os.path.join(parentdir, "aux_scripts", "filterGenemark.pl")
Just replace this code with:
if lib.which("filterGenemark.pl"):
FILTERGENE = os.path.join(parentdir, "aux_scripts", "filterGenemark.pl")
else:
FILTERGENE = os.path.join(parentdir, "aux_scripts", "filterGenemark.pl")
it should be fine.
Are you using the latest release?
I am using funannotate-v1.8.13.
Describe the bug
funannotate is raising a 'Permission denied' error on 'filterGenemark.pl'
filterGenemark.pl file is readable and executable for everybody.
What command did you issue?
Logfiles
OS/Install Information
Thank's !