funannotate test for --pasa_db

nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline

http://funannotate.readthedocs.io

BSD 2-Clause "Simplified" License

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funannotate test for --pasa_db #857

Open ARW-UBT opened 1 year ago

ARW-UBT commented 1 year ago

Hi, is there a possibilty to test whether a mysql configuration is properly set up on linux for PASA? The 'test' command does not allow specifying '--pasa_db mysql'.

Best regards

hyphaltip commented 1 year ago

I think we can add something for it - I feel like we have to roll up our sleeves for some more comprehensive unit tests all around TBH... I'm happy to start doing that but I know @nextgenusfs is also working on a new version and I want to be in sync with his coding.