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nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
321 stars 85 forks source link

braker installation error #96

Closed jannafierst closed 7 years ago

jannafierst commented 7 years ago

Hi,

I've been following the Mac OS installation but I get the following error when trying to install braker or funannotate

jannafierst$ brew install funannotate ==> Installing funannotate from nextgenusfs/tap ==> Installing dependencies for nextgenusfs/tap/funannotate: braker ==> Installing nextgenusfs/tap/funannotate dependency: braker ==> Downloading http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz ######################################################################## 100.0% Error: SHA256 mismatch Expected: 9a941992535e8fe0c324ad9c4cc58fbf76e36400a5541d45ec7236618487cd04 Actual: cb2d9abe1720ed58753d362eee4af3791007efc617754804882d31f9fe2eab00 Archive: /Users/jannafierst/Library/Caches/Homebrew/braker-1.10.tar.gz To retry an incomplete download, remove the file above.

I cleaned everything up and updated/upgraded but I can't seem to get past this error. I checked the http://bioinf.uni-greifswald.de/augustus/binaries/ site and it seems they upgraded braker from 1.10 to 1.11 on July 5 - could this cause the error? Thanks!

nextgenusfs commented 7 years ago

Yes, that is the issue. I will update formula, give me a minute.

nextgenusfs commented 7 years ago

Can you try again now? I had the link pointing to the most recent version, didn't know they would use the same name for a newer version. It is explicit now to v1.11 - although this may break when/if they update again.... thanks for letting me know.

jannafierst commented 7 years ago

new error:

jannafierst$ brew install funannotate ==> Installing funannotate from nextgenusfs/tap ==> Installing dependencies for nextgenusfs/tap/funannotate: braker ==> Installing nextgenusfs/tap/funannotate dependency: braker ==> Downloading http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v1.11.tar.gz ######################################################################## 100.0% Error: inreplace failed braker.pl: expected replacement of "/usr/bin/perl" with "/usr/bin/env perl"

Thanks for looking at this!

nextgenusfs commented 7 years ago

Oh, they must have fixed this.... try it again now.

jannafierst commented 7 years ago

Works, thanks!