hyphaltip
commented
8 months ago This seems outside the scope of funannotate. if you would like to build visualization tools with the output from annotation that is great but not the primary purpose of this toolkit.
For barrnap - not sure it is possible to easily import this into the prediction features to be incorporated. Will see if @nextgenusfs has thoughts on it but seems feasible in a future release. you could just insert the features you need into the .tbl file and re-generate the gbk and sqn files from that.
Funannotate pipeline is awesome. I have two queries.
1) how to incorporate results of Barrnap (rRNA prediction) in final genebank and other annotated files. 2) Add tool to generate circos plot of fungal genome. I don't see any module/tool in this pipeline. I am using MGCplotter for bacterial genome. I am able to generate plot from genebank file for my genome but without rRNA.