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nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
300 stars 82 forks source link

Funannotate setup database fails #971

Closed dgslos closed 8 months ago

dgslos commented 8 months ago

funannotate setup -d /home/genomics/bioinf_databases/funannotate_db/

[Oct 20 03:11 PM]: OS: Ubuntu 22.04, 128 cores, ~ 198 GB RAM. Python: 3.10.12 [Oct 20 03:11 PM]: Running 1.8.5 [Oct 20 03:11 PM]: Database location: /home/genomics/bioinf_databases/funannotate_db/ [Oct 20 03:11 PM]: Retrieving download links from GitHub Repo [Oct 20 03:11 PM]: Parsing Augustus pre-trained species and porting to funannotate Traceback (most recent call last): File "/home/dslos/.virtualenvs/funannotate/bin/funannotate", line 8, in sys.exit(main()) File "/home/dslos/.virtualenvs/funannotate/lib/python3.10/site-packages/funannotate/funannotate.py", line 705, in main mod.main(arguments) File "/home/dslos/.virtualenvs/funannotate/lib/python3.10/site-packages/funannotate/setupDB.py", line 694, in main meropsDB(DatabaseInfo, args.force, args=args) File "/home/dslos/.virtualenvs/funannotate/lib/python3.10/site-packages/funannotate/setupDB.py", line 139, in meropsDB type, name, version, date, records, checksum = info.get('merops') TypeError: cannot unpack non-iterable NoneType object

dgslos commented 8 months ago

Fixed it by downgrading to python 3.9