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nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
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Submission of two parts sqn files #974

Closed hassantarabai closed 8 months ago

hassantarabai commented 8 months ago

Hello,

I noticed that Funannotate annotate output includes two sqn files (.part_1.sqn and .part_2.sqn) for the genome am annotating. Same for tbl output. Kindly, any advice how to progress in sqn files submission for NCBI as i would expected one sqn file output based on Funannotate manual.

Thank you

nextgenusfs commented 8 months ago

This happens when you have a large genome if I recall correctly, something like tbl2asn can't process more than some number of contigs or genome size. @hyphaltip have you ever had to submit a multiple? Can they just be concatenated?

hyphaltip commented 8 months ago

I always upload both files and it works fine at NCBI. Its split because of size of the number of contigs as jon says.

hassantarabai commented 8 months ago

Thank you for you feedback. I will close the issue.