search

nextgenusfs / funannotate

Eukaryotic Genome Annotation Pipeline
http://funannotate.readthedocs.io
BSD 2-Clause "Simplified" License
300 stars 82 forks source link

UnboundLocalError: local variable 'values1' referenced before assignment #983

Open bgruening opened 7 months ago

bgruening commented 7 months ago

Hi,

we got the following traceback with one of our runs.

Traceback (most recent call last):
  File "/usr/local/tools/_conda/envs/__funannotate@1.8.15/bin/funannotate", line 10, in <module>
    sys.exit(main())
  File "/usr/local/tools/_conda/envs/__funannotate@1.8.15/lib/python3.8/site-packages/funannotate/funannotate.py", line 716, in main
    mod.main(arguments)
  File "/usr/local/tools/_conda/envs/__funannotate@1.8.15/lib/python3.8/site-packages/funannotate/predict.py", line 2074, in main
    lib.trainAugustus(
  File "/usr/local/tools/_conda/envs/__funannotate@1.8.15/lib/python3.8/site-packages/funannotate/library.py", line 10942, in trainAugustus
    train_results = getTrainResults(
  File "/usr/local/tools/_conda/envs/__funannotate@1.8.15/lib/python3.8/site-packages/funannotate/library.py", line 10679, in getTrainResults
    float(values1[1]),
UnboundLocalError: local variable 'values1' referenced before assignment
nextgenusfs commented 7 months ago

Looks like augustus training failed, not exactly sure why from the error here. Is there any information in the outdir/logfiles/augustus_training.log?