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nextgenusfs / gene2product

Curated list of gene names and product descriptions that pass NCBI genome submission rules.
BSD 2-Clause "Simplified" License
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sst2 human AMSH/STAMBP protein ubiquitin specific-protease #17

Open IanDMedeiros opened 2 years ago

IanDMedeiros commented 2 years ago

sst2 human AMSH/STAMBP protein ubiquitin specific-protease is in the ncbi_cleaned_gene_products list, but it throws a fatal error in the discrepancy report:

FATAL: DiscRep_SUB:SUSPECT_PRODUCT_NAMES::Remove organism from product name
DiscRep_SUB:DISC_PRODUCT_NAME_QUICKFIX::1 features contains 'human'

Should this be removed from the list and get flagged for manual curation instead? (Also, seems like it may be a bad annotation to begin with?) I imagine the same might be true for five other products containing "human" in ncbi_cleaned_gene_products, but this is the only one I have encountered in my own data.

hyphaltip commented 2 years ago

Yeah a lot of these in there could be cleaned up. There is also a set of truncations happening in funannotate on the eggnog products. I think a better strategy could be adopted for product names pulling from the NCBI approved products file too.