nextgenusfs / redmask

Genome assembly soft-masking using Red (REpeat Detector)
BSD 2-Clause "Simplified" License
12 stars 4 forks source link

dependencies #3

Open nhartwic opened 1 year ago

nhartwic commented 1 year ago

Project seems pretty dead, but on the off chance someone else shows up, know that this script requires python2, biopython, and natsort. You should be able to handle all dependencies and get running using...

conda create -n RED -c conda-forge -c bioconda red python=2.7 pip natsort biopython git conda activate RED git clone https://github.com/nextgenusfs/redmask.git python redmask/redmask.py ...

kalonji08 commented 4 months ago

Thank you @nhartwic It worked !