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nextjournal / clerk

⚡️ Moldable Live Programming for Clojure
https://clerk.vision
ISC License
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Analyzer crashes on deftype / reify in same ns #497

Open zampino opened 1 year ago

zampino commented 1 year ago

Reproducible by showing the following ns with clerk. Note: it won't reproduce if the defprotocol form (or the whole ns) is evaluated in the REPL before calling clerk/show!. Analysis also won't crash if the protocol is required from another ns. 

(ns scratch.meta-analyzer-issues-vii)

(defprotocol Foo
  (-foo [this]))

(reify Foo
  (-foo [this] :baz))
{:via [{:type java.lang.NullPointerException,
        :message "Cannot invoke \"java.lang.Class.getName()\" because \"p1__5034_SHARP_\" is null",
        :at [clojure.tools.analyzer.jvm$_deftype$fn__5039 invoke "jvm.clj" 319]}],
 :trace [[clojure.tools.analyzer.jvm$_deftype$fn__5039 invoke "jvm.clj" 319]
         [clojure.core$mapv$fn__8535 invoke "core.clj" 6979]
         [clojure.core.protocols$iter_reduce invokeStatic "protocols.clj" 49]
         [clojure.core.protocols$fn__8230 invokeStatic "protocols.clj" 75]
         [clojure.core.protocols$fn__8230 invoke "protocols.clj" 75]
         [clojure.core.protocols$fn__8178$G__8173__8191 invoke "protocols.clj" 13]
         [clojure.core$reduce invokeStatic "core.clj" 6886]
         [clojure.core$mapv invokeStatic "core.clj" 6970]
         [clojure.core$mapv invoke "core.clj" 6970]
         [clojure.tools.analyzer.jvm$_deftype invokeStatic "jvm.clj" 319]
         [clojure.tools.analyzer.jvm$_deftype invoke "jvm.clj" 313]
         [nextjournal.clerk.analyzer$analyze_form$_deftype__56360 invoke "analyzer.clj" 140]
         [clojure.tools.analyzer.jvm$parse_reify_STAR_ invokeStatic "jvm.clj" 334]
         [clojure.tools.analyzer.jvm$parse_reify_STAR_ invoke "jvm.clj" 324]
         [clojure.tools.analyzer.jvm$parse invokeStatic "jvm.clj" 427]
         [clojure.tools.analyzer.jvm$parse invoke "jvm.clj" 424]
         [clojure.tools.analyzer$analyze_seq invokeStatic "analyzer.clj" 271]
         [clojure.tools.analyzer$analyze_seq invoke "analyzer.clj" 262]
         [clojure.tools.analyzer$eval1933$fn__1934 invoke "analyzer.clj" 63]
         [clojure.lang.MultiFn invoke "MultiFn.java" 234]
         [clojure.tools.analyzer$analyze_seq invokeStatic "analyzer.clj" 272]
         [clojure.tools.analyzer$analyze_seq invoke "analyzer.clj" 262]
         [clojure.tools.analyzer$eval1933$fn__1934 invoke "analyzer.clj" 63]
         [clojure.lang.MultiFn invoke "MultiFn.java" 234]
         [clojure.tools.analyzer$analyze invokeStatic "analyzer.clj" 115]
         [clojure.tools.analyzer$analyze invoke "analyzer.clj" 88]
         [clojure.tools.analyzer.jvm$analyze$fn__5099$fn__5104 invoke "jvm.clj" 513]
         [clojure.tools.analyzer.jvm$analyze$fn__5099 invoke "jvm.clj" 511]
         [clojure.lang.AFn applyToHelper "AFn.java" 152]
         [clojure.lang.AFn applyTo "AFn.java" 144]
         [clojure.core$apply invokeStatic "core.clj" 667]
         [clojure.core$with_bindings_STAR_ invokeStatic "core.clj" 1990]
         [clojure.core$with_bindings_STAR_ doInvoke "core.clj" 1990]
         [clojure.lang.RestFn invoke "RestFn.java" 425]
         [clojure.tools.analyzer.jvm$analyze invokeStatic "jvm.clj" 500]
         [clojure.tools.analyzer.jvm$analyze invoke "jvm.clj" 480]
         [nextjournal.clerk.analyzer$analyze_form$fn__56362 invoke "analyzer.clj" 141]
         [clojure.core$with_redefs_fn invokeStatic "core.clj" 7582]
         [clojure.core$with_redefs_fn invoke "core.clj" 7566]
         [nextjournal.clerk.analyzer$analyze_form invokeStatic "analyzer.clj" 138]
zampino commented 1 year ago

The same happens in a plain analyzer call, when the type is not yet in context:

(clojure.tools.analyzer.jvm/analyze '(reify Foo
                                         (-foo [this] :baz)))
;; throws
;; Execution error (NullPointerException) at clojure.tools.analyzer.jvm/-deftype$fn (jvm.clj:319).
;; Cannot invoke "java.lang.Class.getName()" because "p1__5034_SHARP_" is null

Therefore I don't believe is related the changes in #386.

teodorlu commented 7 months ago

I believe I hit this issue too.

The full namespace where I hit the error

https://github.com/teodorlu/play.teod.eu/tree/fe70f7ed3fc6f997669b5356925f220d0c6e5038/how-much-is-that-second-dice-worth/second_dice.clj

I hit it when implementing Sample for Dice. The protocol already existed, and I needed to implement it for a new record.

REPL is run from the same folder as second_dice.clj, not the parent folder (which also contains a deps.edn file).

Observations

  1. Clerk version: io.github.nextjournal/clerk {:mvn/version "0.15.957"}
  2. I'm using a "bare" namespace (no dots in it): (ns second-dice ,,,), and :paths ["."] in deps.edn
  3. *clojure-version* is {:major 1, :minor 11, :incremental 1, :qualifier nil}
  4. In my namespace, I first define a protocol Sample, then create two records Uniform and Dice that implement the protocol
  5. With a call to clerk/show! I hit a :clojure.error/cause "No implementation of method: :sample of protocol: #'second-dice/Sample found for class: second_dice.Dice". (see screenshot and attached CIDER error)
  6. When I evaluate each form from top to bottom in a REPL from CIDER, I hit no errors.
  7. When I call clerk/clear-cache!, then clerk/show! after, I hit no errors.
  8. I tried narrowing down the error to figure out exactly went wrong, but wasn't able to reproduce with a simpler example.

Screenshot of what I'm seeing:

image

Full CIDER error

CIDER ERROR 

  Show: Project-Only All 
  Hide: Clojure Java REPL Tooling Duplicates  (0 frames hidden)

2. Unhandled clojure.lang.ExceptionInfo
   `nextjournal.clerk/show!` encountered an eval error with:
   `"/Users/teodorlu/dev/teodorlu/play.teod.eu/how-much-is-that-second-dice-worth/second_dice.clj"`
   #:nextjournal.clerk{:doc
                       {:nav-path "second_dice",
                        :blocks
                        [{:type :markdown,
                          :doc
                          {:type :doc,
                           :content
                           [{:type :heading,
                             :content
                             [{:type :text,
                               :text "How much is that second dice worth?"}],
                             :heading-level 1,
                             :attrs {:id "how-much-is-that-second-dice-worth?"}}],
                           :footnotes []}}
                         {:type :code,
                          :text
                          "(ns second-dice\n  {:nextjournal.clerk/toc true}\n  (:require\n   [nextjournal.clerk :as clerk]))",
                          :loc {:line 3, :end-line 6, :column 1, :end-column 35}}
                         {:type :markdown,
                          :doc
                          {:type :doc,
                           :content
                           [{:type :heading,
                             :content [{:type :text, :text "Rationale"}],
                             :heading-level 2,
                             :attrs {:id "rationale"}}
                            {:type :paragraph,
                             :content
                             [{:type :text,
                               :text
                               "what is the expected value of the best of two dice throws?"}]}
                            {:type :paragraph,
                             :content
                             [{:type :text,
                               :text "let's find out with monte-carlo!"}]}
                            {:type :paragraph,
                             :content
                             [{:type :text, :text "in which you'll learn:"}]}
                            {:type :bullet-list,
                             :content
                             [{:type :list-item,
                               :content
                               [{:type :plain,
                                 :content
                                 [{:type :text,
                                   :text
                                   "How to use Monte-Carlo simulation to optimize your Arcane Survivors strategy."}]}]}
                              {:type :list-item,
                               :content
                               [{:type :plain,
                                 :content
                                 [{:type :text,
                                   :text
                                   "How to implement Monte-Carlo simulation in Clojure."}]}]}]}
                            {:type :heading,
                             :content
                             [{:type :text, :text "To sample uniform data"}],
                             :heading-level 2,
                             :attrs {:id "to-sample-uniform-data"}}],
                           :footnotes []}}
                         {:type :code,
                          :text "213",
                          :loc {:line 21, :end-line 21, :column 1, :end-column 4}}
                         {:type :code,
                          :text "(defprotocol Sample\n  (sample [this n]))",
                          :loc
                          {:line 23, :end-line 24, :column 1, :end-column 21}}
                         {:type :code,
                          :text
                          "(defrecord Uniform [lower upper]\n  Sample\n  (sample [_this n]\n    (repeatedly n #(+ lower (rand (- upper lower))))))",
                          :loc
                          {:line 26, :end-line 29, :column 1, :end-column 55}}
                         {:type :code,
                          :text "(sample (Uniform. 1 300) 10)",
                          :loc
                          {:line 31, :end-line 31, :column 1, :end-column 29}}
                         {:type :code,
                          :text
                          "(defrecord Dice [sides]\n  Sample\n  (sample [_this n]\n    (repeatedly n #(inc (rand-int sides)))))",
                          :loc
                          {:line 33, :end-line 36, :column 1, :end-column 45}}
                         {:type :code,
                          :text "(comment (clerk/clear-cache!))",
                          :loc
                          {:line 38, :end-line 38, :column 1, :end-column 31}}
                         {:type :code,
                          :text
                          "(defn mean [xs] (float (/ (reduce + xs) (count xs))))",
                          :loc
                          {:line 40, :end-line 40, :column 1, :end-column 54}}
                         {:type :code,
                          :text "(def d6 (Dice. 6))",
                          :loc
                          {:line 42, :end-line 42, :column 1, :end-column 19}}
                         {:type :code,
                          :text
                          "(let [d6-sample (sample d6 1000)]\n  {:mean (mean d6-sample)\n   :min (apply min d6-sample)\n   :max (apply max d6-sample)})",
                          :loc
                          {:line 44, :end-line 47, :column 1, :end-column 32}}
                         {:type :code,
                          :text "(sample d6 10)",
                          :loc
                          {:line 49, :end-line 49, :column 1, :end-column 15}}
                         {:type :code,
                          :text "(def d20 (Dice. 20))",
                          :loc
                          {:line 51, :end-line 51, :column 1, :end-column 21}}
                         {:type :code,
                          :text "(sample d20 10)",
                          :loc
                          {:line 53, :end-line 53, :column 1, :end-column 16}}
                         {:type :markdown,
                          :doc
                          {:type :doc,
                           :content
                           [{:type :paragraph,
                             :content
                             [{:type :text, :text "this doesn't look "}
                              {:type :em,
                               :content [{:type :text, :text "directly"}]}
                              {:type :text, :text " wrong."}]}
                            {:type :paragraph,
                             :content
                             [{:type :text,
                               :text
                               "but we want to view histograms, not numbers with lots of decimal places!"}]}
                            {:type :paragraph,
                             :content
                             [{:type :text, :text "let's use Vega-Lite."}]}
                            {:type :heading,
                             :content
                             [{:type :text, :text "Histogram viewer, take 1"}],
                             :heading-level 2,
                             :attrs {:id "histogram-viewer,-take-1"}}],
                           :footnotes []}}
                         {:type :code,
                          :text
                          "(clerk/caption \"Looks like a histogram?\"\n               (clerk/vl\n                {:width 500\n                 :height 300\n                 :data {:values [{\"a\" \"A\", \"b\" 28}, {\"a\" \"B\", \"b\" 55}, {\"a\" \"C\", \"b\" 43},\n                                 {\"a\" \"D\", \"b\" 91}, {\"a\" \"E\", \"b\" 81}, {\"a\" \"F\", \"b\" 53},\n                                 {\"a\" \"G\", \"b\" 19}, {\"a\" \"H\", \"b\" 87}, {\"a\" \"I\", \"b\" 52}]},\n                 :mark :bar,\n                 :encoding {:x {:field \"a\", :type \"nominal\", \"axis\" {:labelAngle 0}},\n                            :y {:field \"b\", :type \"quantitative\"}}}))",
                          :loc
                          {:line 63, :end-line 72, :column 1, :end-column 70}}
                         {:type :markdown,
                          :doc
                          {:type :doc,
                           :content
                           [{:type :heading,
                             :content [{:type :text, :text "but ... buckets???"}],
                             :heading-level 2,
                             :attrs {:id "but-...-buckets???"}}],
                           :footnotes []}}
                         {:type :code,
                          :text
                          "(clerk/caption \"Looks like a histogram?\"\n (clerk/vl\n  {:width 500\n   :height 300\n   :data {:values [{\"a\" \"A\", \"b\" 28}, {\"a\" \"B\", \"b\" 55}, {\"a\" \"C\", \"b\" 43},\n                   {\"a\" \"D\", \"b\" 91}, {\"a\" \"E\", \"b\" 81}, {\"a\" \"F\", \"b\" 53},\n                   {\"a\" \"G\", \"b\" 19}, {\"a\" \"H\", \"b\" 87}, {\"a\" \"I\", \"b\" 52}]},\n   :mark :bar,\n   :encoding {:x {:field \"a\", :type \"nominal\", \"axis\" {:labelAngle 0}},\n              :y {:field \"b\", :type \"quantitative\"}}}))",
                          :loc
                          {:line 76, :end-line 85, :column 1, :end-column 56}}
                         {:type :code,
                          :text
                          "^{:nextjournal.clerk/visibility {:code :hide}}\n(clerk/html [:div {:style {:height \"50vh\"}}])",
                          :loc
                          {:line 87, :end-line 88, :column 1, :end-column 46}}],
                        :title "How much is that second dice worth?",
                        :toc
                        {:type :toc,
                         :children
                         [{:type :toc,
                           :content
                           [{:type :text,
                             :text "How much is that second dice worth?"}],
                           :heading-level 1,
                           :attrs {:id "how-much-is-that-second-dice-worth?"},
                           :path [:content 0],
                           :children
                           [{:type :toc,
                             :content [{:type :text, :text "Rationale"}],
                             :heading-level 2,
                             :attrs {:id "rationale"},
                             :path [:content 1]}
                            {:type :toc,
                             :content
                             [{:type :text, :text "To sample uniform data"}],
                             :heading-level 2,
                             :attrs {:id "to-sample-uniform-data"},
                             :path [:content 6]}
                            {:type :toc,
                             :content
                             [{:type :text, :text "Histogram viewer, take 1"}],
                             :heading-level 2,
                             :attrs {:id "histogram-viewer,-take-1"},
                             :path [:content 10]}
                            {:type :toc,
                             :content [{:type :text, :text "but ... buckets???"}],
                             :heading-level 2,
                             :attrs {:id "but-...-buckets???"},
                             :path [:content 11]}]}]},
                        :footnotes [],
                        :file
                        "/Users/teodorlu/dev/teodorlu/play.teod.eu/how-much-is-that-second-dice-worth/second_dice.clj",
                        :blob->result
                        {"5dsoxVNmQxeLrQc5BYuiSYpP3pPgPU"
                         #:nextjournal{:value smaller.Uniform,
                                       :blob-id "5dsoxVNmQxeLrQc5BYuiSYpP3pPgPU"},
                         "5duBRHzaZJdte1P7SqWpWzez5h2D6e"
                         #:nextjournal{:value nil,
                                       :blob-id "5duBRHzaZJdte1P7SqWpWzez5h2D6e"},
                         "8VxMLktXDdtVMc8iXimmtZ8NSKSLuY18iS4X8ByUYe38wJcyDLyPHV17oQkSvYDuZuMZzBdwAVhWgxupuvjsQC4uMd"
                         #:nextjournal{:value nil,
                                       :blob-id
                                       "8VxMLktXDdtVMc8iXimmtZ8NSKSLuY18iS4X8ByUYe38wJcyDLyPHV17oQkSvYDuZuMZzBdwAVhWgxupuvjsQC4uMd"},
                         "5dsqSVvyyeABSYbgw2YaeNe3zVVZNZ"
                         #:nextjournal{:value {:mean 3.482, :min 1, :max 6},
                                       :blob-id "5dsqSVvyyeABSYbgw2YaeNe3zVVZNZ"},
                         "5dtGpKAVzd6dSw8dGHhKShj3zo76QR"
                         #:nextjournal{:value
                                       #:nextjournal.clerk{:var-from-def
                                                           #'smaller/d6},
                                       :blob-id "5dtGpKAVzd6dSw8dGHhKShj3zo76QR"},
                         "5dr3zv65J8wG2hqKjzscmsTfZcar9q"
                         #:nextjournal{:value
                                       (63.94751404528239
                                        109.61342435999796
                                        211.8930144616428
                                        247.4013624582594
                                        132.50491614451082
                                        251.8310728888618
                                        68.69533339809387
                                        124.25178328910593
                                        57.57708915051512
                                        131.46465307550073),
                                       :blob-id "5dr3zv65J8wG2hqKjzscmsTfZcar9q"},
                         "8VxpH18GjYxNbx3R7fHcpHJuFTraYGmZAYfbMhhinozHi5hXSCRecGJTtk8WHo1AhJghN16Hb3nFNMfQdcbhFPUeHz"
                         #:nextjournal{:value Sample,
                                       :blob-id
                                       "8VxpH18GjYxNbx3R7fHcpHJuFTraYGmZAYfbMhhinozHi5hXSCRecGJTtk8WHo1AhJghN16Hb3nFNMfQdcbhFPUeHz",
                                       :interned #{smaller/sample}},
                         "5dthtWrreajuETiyE2wMakNLShorEF"
                         #:nextjournal{:value smaller.Dice,
                                       :blob-id
                                       "5dthtWrreajuETiyE2wMakNLShorEF"}}}}
                 clerk.clj:   66  nextjournal.clerk/show!/fn
                 clerk.clj:   64  nextjournal.clerk/show!
                 clerk.clj:   21  nextjournal.clerk/show!
                 clerk.clj:   32  nextjournal.clerk/show!
                 clerk.clj:   21  nextjournal.clerk/show!
                      REPL:    1  second-dice/eval35852
                      REPL:    1  second-dice/eval35852
             Compiler.java: 7194  clojure.lang.Compiler/eval
             Compiler.java: 7149  clojure.lang.Compiler/eval
                  core.clj: 3215  clojure.core/eval
                  core.clj: 3211  clojure.core/eval
    interruptible_eval.clj:   87  nrepl.middleware.interruptible-eval/evaluate/fn/fn
                  AFn.java:  152  clojure.lang.AFn/applyToHelper
                  AFn.java:  144  clojure.lang.AFn/applyTo
                  core.clj:  667  clojure.core/apply
                  core.clj: 1990  clojure.core/with-bindings*
                  core.clj: 1990  clojure.core/with-bindings*
               RestFn.java:  425  clojure.lang.RestFn/invoke
    interruptible_eval.clj:   87  nrepl.middleware.interruptible-eval/evaluate/fn
                  main.clj:  437  clojure.main/repl/read-eval-print/fn
                  main.clj:  437  clojure.main/repl/read-eval-print
                  main.clj:  458  clojure.main/repl/fn
                  main.clj:  458  clojure.main/repl
                  main.clj:  368  clojure.main/repl
               RestFn.java: 1523  clojure.lang.RestFn/invoke
    interruptible_eval.clj:   84  nrepl.middleware.interruptible-eval/evaluate
    interruptible_eval.clj:   56  nrepl.middleware.interruptible-eval/evaluate
    interruptible_eval.clj:  152  nrepl.middleware.interruptible-eval/interruptible-eval/fn/fn
                  AFn.java:   22  clojure.lang.AFn/run
               session.clj:  218  nrepl.middleware.session/session-exec/main-loop/fn
               session.clj:  217  nrepl.middleware.session/session-exec/main-loop
                  AFn.java:   22  clojure.lang.AFn/run
               Thread.java: 1583  java.lang.Thread/run

1. Caused by clojure.lang.ExceptionInfo
   Execution error (IllegalArgumentException) at second-dice/eval35990$fn$G
   (second_dice.clj:23). No implementation of method: :sample of protocol:
   #'second-dice/Sample found for class: second_dice.Dice

   {:clojure.error/cause
    "No implementation of method: :sample of protocol: #'second-dice/Sample found for class: second_dice.Dice",
    :clojure.error/phase :execution,
    :clojure.error/symbol second-dice/eval35990$fn$G,
    :clojure.error/line 23,
    :clojure.error/class java.lang.IllegalArgumentException,
    :clojure.error/source "second_dice.clj",
    :line 44,
    :col 1,
    :clojure.core/eval-file
    "/Users/teodorlu/dev/teodorlu/play.teod.eu/how-much-is-that-second-dice-worth/second_dice.clj",
    :form
    (let
     [d6-sample (sample d6 1000)]
     {:mean (mean d6-sample),
      :min (apply min d6-sample),
      :max (apply max d6-sample)})}
                  eval.clj:  155  nextjournal.clerk.eval/eval+cache!
                  eval.clj:  122  nextjournal.clerk.eval/eval+cache!
                  eval.clj:  194  nextjournal.clerk.eval/read+eval-cached
                  eval.clj:  165  nextjournal.clerk.eval/read+eval-cached
                  eval.clj:  234  nextjournal.clerk.eval/eval-analyzed-doc/fn
     PersistentVector.java:  343  clojure.lang.PersistentVector/reduce
                  core.clj: 6885  clojure.core/reduce
                  core.clj: 6868  clojure.core/reduce
                  eval.clj:  229  nextjournal.clerk.eval/eval-analyzed-doc
                  eval.clj:  226  nextjournal.clerk.eval/eval-analyzed-doc
                  eval.clj:  253  nextjournal.clerk.eval/+eval-results
                  eval.clj:  246  nextjournal.clerk.eval/+eval-results
                 clerk.clj:   64  nextjournal.clerk/show!/fn
                 clerk.clj:   64  nextjournal.clerk/show!
                 clerk.clj:   21  nextjournal.clerk/show!
                 clerk.clj:   32  nextjournal.clerk/show!
                 clerk.clj:   21  nextjournal.clerk/show!
                      REPL:    1  second-dice/eval35852
                      REPL:    1  second-dice/eval35852
             Compiler.java: 7194  clojure.lang.Compiler/eval
             Compiler.java: 7149  clojure.lang.Compiler/eval
                  core.clj: 3215  clojure.core/eval
                  core.clj: 3211  clojure.core/eval
    interruptible_eval.clj:   87  nrepl.middleware.interruptible-eval/evaluate/fn/fn
                  AFn.java:  152  clojure.lang.AFn/applyToHelper
                  AFn.java:  144  clojure.lang.AFn/applyTo
                  core.clj:  667  clojure.core/apply
                  core.clj: 1990  clojure.core/with-bindings*
                  core.clj: 1990  clojure.core/with-bindings*
               RestFn.java:  425  clojure.lang.RestFn/invoke
    interruptible_eval.clj:   87  nrepl.middleware.interruptible-eval/evaluate/fn
                  main.clj:  437  clojure.main/repl/read-eval-print/fn
                  main.clj:  437  clojure.main/repl/read-eval-print
                  main.clj:  458  clojure.main/repl/fn
                  main.clj:  458  clojure.main/repl
                  main.clj:  368  clojure.main/repl
               RestFn.java: 1523  clojure.lang.RestFn/invoke
    interruptible_eval.clj:   84  nrepl.middleware.interruptible-eval/evaluate
    interruptible_eval.clj:   56  nrepl.middleware.interruptible-eval/evaluate
    interruptible_eval.clj:  152  nrepl.middleware.interruptible-eval/interruptible-eval/fn/fn
                  AFn.java:   22  clojure.lang.AFn/run
               session.clj:  218  nrepl.middleware.session/session-exec/main-loop/fn
               session.clj:  217  nrepl.middleware.session/session-exec/main-loop
                  AFn.java:   22  clojure.lang.AFn/run
               Thread.java: 1583  java.lang.Thread/run