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nextstrain / WNV

the repository used to build West Nile Virus for nextstrain
https://nextstrain.org/WNV/NA
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ingest/automation: Update S3 URLs to uppercase #22

Closed joverlee521 closed 1 month ago

joverlee521 commented 1 month ago

Description of proposed changes

Automated uploads of files have been failing because of mismatch in casing. Update all S3 URLs to match expected uppercase since change in https://github.com/nextstrain/infra/pull/31.

Checklist

joverlee521 commented 1 month ago

Manually ran the ingest-to-phylogenetic workflow after merging. Ingest ran successfully and uploaded the new metadata TSV and sequences FASTA.

However, the cache remained the same and did not trigger the phylo workflow...will investigate.