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nextstrain / WNV

the repository used to build West Nile Virus for nextstrain
https://nextstrain.org/WNV/NA
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Fix cache #23

Closed joverlee521 closed 1 month ago

joverlee521 commented 1 month ago

Description of proposed changes

Fixes the ingest-to-phylogenetic workflow cache.

  1. Adds a message to the GH Action summary if the cache step did not find the Metadata.sha256sum for an S3 file (example).
  2. Updates the S3 URLs in the cache step to match the current S3 URLs.

Related issue(s)

Follow up to https://github.com/nextstrain/WNV/pull/22#issuecomment-2405780818

Checklist

joverlee521 commented 1 month ago

Phylo build was successfully uploaded and viewable at https://nextstrain.org/staging/WNV/genome

joverlee521 commented 1 month ago

Today's automated run worked as expected.

I did want to note that the automated phylo workflow is still deploying to staging.