Fix molecular clock in global tree - Githubissues

nextstrain / WNV

the repository used to build West Nile Virus for nextstrain

https://nextstrain.org/WNV/NA

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Fix molecular clock in global tree #36

Closed j23414 closed 3 weeks ago

j23414 commented 4 weeks ago

Context

Flagged in https://github.com/nextstrain/WNV/pull/30#issuecomment-2436212276

Description

We expect a reasonable date axis on phylogenetic trees and reasonable branch points.

Examples

Possible solution(s)

Manually curate date annotations in the base of the global tree
Evaluate if separating by lineage provides consistent molecular clock estimates, or are at different rates
tktk