Link out to Nextclade - Githubissues

nextstrain / WNV

the repository used to build West Nile Virus for nextstrain

https://nextstrain.org/WNV/NA

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Link out to Nextclade #49

Closed j23414 closed 6 hours ago

j23414 commented 2 days ago

Description of proposed changes

Enable linking out to Nextclade

Add root sequence to the exported auspice json files
Add 'lineage' to traits inference
Add 'lineage' to global auspice config
Add descriptive names for each of the Nextclade datasets

Working tests:

Global dataset: https://next.nextstrain.org/staging/WNV/nextclade3
Washington focused dataset: https://next.nextstrain.org/staging/WNV/WA3

wa_linkout

wa_results

Related issue(s)

https://github.com/nextstrain/WNV/issues/43

Checklist

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