Verify the strain name pattern and use a backup field value if the strain name pattern does not match. This subcommand was more relevant when augur did not have the --metadata-id-column option and the strain column was required to be non-empty and unique.
Context
Verify the strain name pattern and use a backup field value if the strain name pattern does not match. This subcommand was more relevant when augur did not have the
--metadata-id-columnoption and thestraincolumn was required to be non-empty and unique.Description
augur curate transform-strain-namecan start from transform-strain-names from ingest.Consider https://github.com/nextstrain/augur/issues/1515 or leave as a future TODO.