nextstrain / augur

Pipeline components for real-time phylodynamic analysis
https://docs.nextstrain.org/projects/augur/
GNU Affero General Public License v3.0
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Curate standard geolocation rules #1488

Open joverlee521 opened 1 week ago

joverlee521 commented 1 week ago

Originally part of https://github.com/nextstrain/augur/issues/1003, but this is a much bigger task than just porting over an existing script!

We have a great list of manually curated geolocation rules in ncov-ingest that our pathogen-repo-guide points to as the "general" geolocation rules, but these should really be curated down to a standard set of geolocation rules in augur.