I keep forgetting that the "Asia" region is not included in the default colors in Augur, which can result in grey color for Asia in builds unless the pathogen repo includes customs colors to override the defaults.
mpox, rsv, and dengue use some variation of assign-colors.py to create custom colors as part of the workflow, which is proposed as a separate augur command in https://github.com/nextstrain/augur/issues/1185
I keep forgetting that the "Asia" region is not included in the default colors in Augur, which can result in grey color for Asia in builds unless the pathogen repo includes customs colors to override the defaults.
For example, zika and seasonal-cov do not have custom colors while measles does define custom colors.
mpox, rsv, and dengue use some variation of
assign-colors.pyto create custom colors as part of the workflow, which is proposed as a separate augur command in https://github.com/nextstrain/augur/issues/1185