nextstrain / augur

Pipeline components for real-time phylodynamic analysis
https://docs.nextstrain.org/projects/augur/
GNU Affero General Public License v3.0
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Port apply-geolocation-rules to augur curate #1491

Closed victorlin closed 1 week ago

victorlin commented 1 week ago

Description of proposed changes

Porting over from nextstrain/ingest with minimal functional changes.

Related issue(s)

Checklist

codecov[bot] commented 1 week ago

Codecov Report

Attention: Patch coverage is 95.40230% with 4 lines in your changes missing coverage. Please review.

Project coverage is 69.15%. Comparing base (ff5f880) to head (295f280).

Files Patch % Lines
augur/curate/apply_geolocation_rules.py 95.34% 1 Missing and 3 partials :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #1491 +/- ## ========================================== + Coverage 68.86% 69.15% +0.29% ========================================== Files 69 70 +1 Lines 7608 7694 +86 Branches 1861 1887 +26 ========================================== + Hits 5239 5321 +82 - Misses 2086 2087 +1 - Partials 283 286 +3 ```

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