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nextstrain / augur

Pipeline components for real-time phylodynamic analysis
https://docs.nextstrain.org/projects/augur/
GNU Affero General Public License v3.0
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CI `build-docs` failing #1498

Closed joverlee521 closed 3 months ago

joverlee521 commented 3 months ago

Upstream issue: https://github.com/biopython/biopython/issues/4765

The build-docs job in our CI is failing on master

Maybe related warning message:

loading intersphinx inventory from https://biopython.org/docs/latest/api/objects.inv...
loading intersphinx inventory from https://docs.nextstrain.org/en/latest/objects.inv...
loading intersphinx inventory from https://docs.nextstrain.org/projects/cli/en/stable/objects.inv...
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv...
loading intersphinx inventory from https://pandas.pydata.org/docs/objects.inv...
loading intersphinx inventory from https://treetime.readthedocs.io/en/stable/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://biopython.org/docs/latest/api/objects.inv' not fetchable due to <class 'requests.exceptions.HTTPError'>: 404 Client Error: Not Found for url: https://biopython.org/docs/latest/api/objects.inv
victorlin commented 3 months ago

Created an issue upstream: https://github.com/biopython/biopython/issues/4765

I'll make a PR with the workaround.