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nextstrain / augur

Pipeline components for real-time phylodynamic analysis
https://docs.nextstrain.org/projects/augur/
GNU Affero General Public License v3.0
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Support numpy major version 2 #1504

Open corneliusroemer opened 1 week ago

corneliusroemer commented 1 week ago

Numpy has recently released version 2: https://numpy.org/doc/stable/release/2.0.0-notes.html

We currently pin numpy to <2: https://github.com/nextstrain/augur/blob/1694a3fe1f2e4271849120ee08b29cb8286dc1fa/setup.py#L62

See https://github.com/nextstrain/augur/issues/1473 for a similar issue about pandas v2