Closed genehack closed 6 days ago
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Description of proposed changes
This ports
translate-genbank-location
from nextstrain/ingest to theaugur curate
sub-commandparse-genbank-location
.It adds a command-line flag for providing the field name the location data is stored in; this flag defaults to
geo_loc_name
to support NCBI's recent change. I provided this to enable the command to also parse older data with thecountry
field name.Also adds type-hints and tests.
Related issue(s)
1485
Checklist