Fix curate internal quotes take 2

[joverlee521]

Description of proposed changes

Follow the general pattern of creating CSV-like TSVs as discussed in https://github.com/nextstrain/augur/pull/1563#discussion_r1699260164.

We are expecting the CSV-like double quoting when there are internal quotes. If the field value is already correctly double quoted, then there should not be any additional quotes.

Related issue(s)

Resolves https://github.com/nextstrain/augur/issues/1312

Checklist

• [ ] Automated checks pass
• [ ] Check if you need to add a changelog message
• [ ] Check if you need to add tests
• [ ] Check if you need to update docs

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 70.22%. Comparing base (c28fab2) to head (ad029f6).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## master #1565 +/- ## ======================================= Coverage 70.22% 70.22% ======================================= Files 76 76 Lines 7987 7987 Branches 1947 1947 ======================================= Hits 5609 5609 Misses 2092 2092 Partials 286 286 ```

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[tsibley]

Let's discuss this topic more first. I'll open an issue for it.

[tsibley]

https://github.com/nextstrain/augur/issues/1566

[tsibley]

Saving this here for later…

Quote in field value in CSV input.

  $ augur curate passthru --metadata <(echo 'a,b'; echo 'x,"y""z"') --output-metadata -
  a b
  x "y""z"

Quote in field value in NDJSON input.

  $ augur curate passthru --output-metadata - <<<'{"a":"x","b":"y\"z"}'
  a b
  x "y""z"

Tab in field value in NDJSON input.

  $ augur curate passthru --output-metadata - <<<'{"x":"\u0009"}'
  x
  " "

[joverlee521]

I think this PR should be ready for review based on https://github.com/nextstrain/augur/issues/1566#issuecomment-2356678703.