nextstrain / augur

Pipeline components for real-time phylodynamic analysis
https://docs.nextstrain.org/projects/augur/
GNU Affero General Public License v3.0
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CLI: Use raw descriptions #1641

Open victorlin opened 2 months ago

victorlin commented 2 months ago

Description of proposed changes

This is useful for commands such as augur distance which have descriptions written in rST. The rST syntax is preserved and could be removed with a custom formatter class (as done in Nextstrain CLI), but simply using the built-in RawDescriptionHelpFormatter is an improvement over the default behavior.

Note that this only applies to descriptions, not help text for options.

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