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nextstrain / auspice.us

http://auspice.us
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Newick format does not load! #17

Closed Rajan-sust closed 2 years ago

Rajan-sust commented 2 years ago

This my newick file:

(35193_4_118_4749-16835:0.0071704455,((((35193_4_127_4879-16965:0.0000010000,91_PSEU_BANG_1100269125_S12_contig_4879-16965:0.0000010000):0.0032016172,(35193_4_143_4879-16965:0.0016827865,35193_4_226_4879-16965:0.0004669189):0.0015460867):0.0021316564,((((((((((((((35193_4_98_4747-16860:0.0000010000,67_PSEU_BANG_1102967109_S14_contig_4747-16860:0.0000010000):0.0031336711,(35193_4_130_4748-16861:0.0000010000,35193_4_223_4748-16861:0.0000010000):0.0025227318):0.0010079518,35193_4_201_4749-16862:0.0034981816):0.0005910819,((35193_4_101_4880-16993:0.0000010000,35193_4_195_4880-16993:0.0000010000):0.0022065728,35193_4_37_4878-16991:0.0014386610):0.0010236735):0.0012406919,35193_4_228_4879-16992:0.0035977476):0.0011226040,35193_4_112_4748-16861:0.0001715655):0.0028979144,35193_4_220_4879-16992:0.0003427152):0.0040580525,(35193_4_147_4747-16860:0.0043487560,65_PSEU_BANG_1103051109_S13_contig_4747-16860:0.0012100647):0.0007909705):0.0008702566,66_PSEU_BANG_1103099109_S15_contig_4878-16991:0.0017107226):0.0006747966,35193_4_108_4878-16991:0.0006561765):0.0013651058,35193_4_198_4748-16861:0.0028465421):0.0011824292,35193_4_65_4879-16992:0.0034572865):0.0140409027,((35193_4_204_4879-17000:0.0146026516,(35193_4_229_4879-16988:0.0001651109,35193_4_235_4879-16988:0.0000010000):0.0021070896):0.0014631801,(35193_4_59_4878-16987:0.0027193609,((35193_4_110_4878-16987:0.0000010000,35193_4_114_4878-16987:0.0000010000):0.0010040325,35193_4_122_4879-16988:0.0011440353):0.0020929829):0.0017096863):0.0216076732):0.0151129466,(35193_4_34_4748-16861:0.0293647250,35193_4_95_4748-16861:0.0367885989):0.6005671689):0.0153317094):0.0007939199,((35193_4_135_4881-16967:0.0000010000,35193_4_139_4881-16967:0.0000010000):0.0014965220,B1000012_S16_contig_4880-16966:0.0018969756):0.0026919943):0.0017388938,35193_4_232_4748-16834:0.0025433434);

This file does not work in https://auspice.us/ but works in others online tool

jameshadfield commented 2 years ago

Hi @Rajan-sust - auspice.us currently has problems parsing trees without a root branch length - see #13 for more details and how to remedy.

Here's your tree with a zero-length root branch which works in auspice.us:

(35193_4_118_4749-16835:0.0071704455,((((35193_4_127_4879-16965:0.0000010000,91_PSEU_BANG_1100269125_S12_contig_4879-16965:0.0000010000):0.0032016172,(35193_4_143_4879-16965:0.0016827865,35193_4_226_4879-16965:0.0004669189):0.0015460867):0.0021316564,((((((((((((((35193_4_98_4747-16860:0.0000010000,67_PSEU_BANG_1102967109_S14_contig_4747-16860:0.0000010000):0.0031336711,(35193_4_130_4748-16861:0.0000010000,35193_4_223_4748-16861:0.0000010000):0.0025227318):0.0010079518,35193_4_201_4749-16862:0.0034981816):0.0005910819,((35193_4_101_4880-16993:0.0000010000,35193_4_195_4880-16993:0.0000010000):0.0022065728,35193_4_37_4878-16991:0.0014386610):0.0010236735):0.0012406919,35193_4_228_4879-16992:0.0035977476):0.0011226040,35193_4_112_4748-16861:0.0001715655):0.0028979144,35193_4_220_4879-16992:0.0003427152):0.0040580525,(35193_4_147_4747-16860:0.0043487560,65_PSEU_BANG_1103051109_S13_contig_4747-16860:0.0012100647):0.0007909705):0.0008702566,66_PSEU_BANG_1103099109_S15_contig_4878-16991:0.0017107226):0.0006747966,35193_4_108_4878-16991:0.0006561765):0.0013651058,35193_4_198_4748-16861:0.0028465421):0.0011824292,35193_4_65_4879-16992:0.0034572865):0.0140409027,((35193_4_204_4879-17000:0.0146026516,(35193_4_229_4879-16988:0.0001651109,35193_4_235_4879-16988:0.0000010000):0.0021070896):0.0014631801,(35193_4_59_4878-16987:0.0027193609,((35193_4_110_4878-16987:0.0000010000,35193_4_114_4878-16987:0.0000010000):0.0010040325,35193_4_122_4879-16988:0.0011440353):0.0020929829):0.0017096863):0.0216076732):0.0151129466,(35193_4_34_4748-16861:0.0293647250,35193_4_95_4748-16861:0.0367885989):0.6005671689):0.0153317094):0.0007939199,((35193_4_135_4881-16967:0.0000010000,35193_4_139_4881-16967:0.0000010000):0.0014965220,B1000012_S16_contig_4880-16966:0.0018969756):0.0026919943):0.0017388938,35193_4_232_4748-16834:0.0025433434):0;